| lib/miga/result/source.rb | 33 | A 0 mins | A 100% |
| test/daemon_helper.rb | 33 | A 0 mins | A 100% |
| lib/miga/cli/action/doctor/databases.rb | 32 | A 25 mins |
|
| lib/miga/cli/action/seqcode_get.rb | 31 | A 0 mins |
|
| lib/miga/common/hooks.rb | 30 | A 25 mins | A 100% |
| lib/miga/dataset/type.rb | 28 | A 35 mins | B 88% |
| lib/miga/cli/action/files.rb | 26 | A 45 mins |
|
| lib/miga/cli/action/index_wf.rb | 25 | A 0 mins |
|
| lib/miga/result/dates.rb | 25 | A 35 mins | A 100% |
| test/parallel_test.rb | 24 | A 0 mins | A 94% |
| lib/miga/cli/action/rm.rb | 24 | A 55 mins |
|
| lib/miga/project/hooks.rb | 21 | A 0 mins | A 100% |
| lib/miga/common/path.rb | 20 | A 0 mins | A 100% |
| lib/miga/common/with_daemon_class.rb | 20 | A 35 mins | A 100% |
| lib/miga/cli/action/env.rb | 19 | A 0 mins |
|
| lib/miga/parallel.rb | 18 | A 0 mins | A 100% |
| lib/miga/dataset/status.rb | 16 | A 25 mins | A 100% |
| lib/miga/cli/action/next_step.rb | 13 | A 0 mins |
|
| lib/miga/result/versions.rb | 12 | A 0 mins | A 100% |
| lib/miga/cli/action/console.rb | 12 | A 0 mins |
|
| lib/miga/cli/action/date.rb | 11 | A 0 mins |
|
| lib/miga/cli/action/touch.rb | 11 | A 0 mins |
|
| lib/miga/common/errors.rb | 10 | A 0 mins | A 100% |
| lib/miga/result/base.rb | 10 | A 0 mins | A 100% |
| lib/miga.rb | 5 | A 0 mins | A 100% |
| manual/OLD-README.md | |
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| manual/part2/installation.md | |
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| manual/part2/input.md | |
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| manual/part4/deploy-clade-bash.md | |
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| manual/part5/external.md | |
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| manual/part4/deploy-refseq.md | |
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| manual/part2/distances.md | |
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| manual/part6/derep_wf.md | |
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| manual/part6/preproc_wf.md | |
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| manual/part2.md | |
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| manual/part5.md | |
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| manual/part3/API.md | |
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| manual/summary.md | |
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| manual/part5/metadata.md | |
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| manual/part2/requirements/apt-get.md | |
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| manual/part2/requirements/brew.md | |
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| manual/part6/summaries.md | |
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| manual/part5/workflow.md | |
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| manual/img/web1.jpg | |
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| manual/part1/use-cases.md | |
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| manual/part3/CLI.md | |
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| manual/part3/Web.md | |
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| manual/part5/advanced-configuration.md | |
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| manual/part2/types.md | |
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| manual/part1/contributors.md | |
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