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Showing 185 of 1,638 total issues

Method db_requested has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

  def db_requested(manif)
    [:recommended, :test].each do |n|
      if cli[:database] == n
        raise "This host has no #{n} database" if manif[n].nil?
Severity: Minor
Found in lib/miga/cli/action/db.rb - About 25 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Method profile_advance has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

  def profile_advance(save = false)
    # Determine the start point
    first_task = first_preprocessing(save) or
      return Array.new(self.class.PREPROCESSING_TASKS.size, 0)
Severity: Minor
Found in lib/miga/dataset/result.rb - About 25 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Method ncbi_asm_get has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

    def ncbi_asm_get(opts)
      require 'tempfile'
      require 'zip'

      zipped = download(
Severity: Minor
Found in lib/miga/remote_dataset/download.rb - About 25 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Method add_result_mytaxa has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

  def add_result_mytaxa(base, _opts)
    if multi?
      return nil unless
        result_files_exist?(base, '.mytaxa') ||
        result_files_exist?(base, '.nomytaxa.txt')
Severity: Minor
Found in lib/miga/dataset/result/add.rb - About 25 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Method list_local has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

  def list_local
    local_manif = local_manifest
    raise "Local manifest not found." unless local_manif
    databases =
      if %i[recommended test].include?(cli[:database])
Severity: Minor
Found in lib/miga/cli/action/db.rb - About 25 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

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