| Name | Lines of code | Maintainability | Test coverage |
| .codeclimate.yml | |||
| .dockerignore | |||
| .envrc | |||
| .gitattributes | |||
| .github/actions/setup-nix/action.yml | |||
| .github/dependabot.yml | |||
| .github/workflows/ci.yml | |||
| .gitignore | |||
| .pre-commit-config.yaml | |||
| .yamllint.yaml | |||
| CHANGELOG.rst | |||
| LICENSE | |||
| Makefile | |||
| README.md | |||
| crimson/__init__.py | 11 | A 0 mins | A 100% |
| crimson/cli.py | 157 | A 0 mins | A 100% |
| crimson/fastqc.py | 187 | A 0 mins | A 96% |
| crimson/flagstat.py | 68 | A 0 mins | A 100% |
| crimson/fusioncatcher.py | 155 | A 0 mins | B 88% |
| crimson/picard.py | 83 | A 0 mins | A 92% |
| crimson/star.py | 77 | A 25 mins | A 90% |
| crimson/star_fusion.py | 337 | A 1 hr | A 100% |
| crimson/utils.py | 83 | A 0 mins | B 83% |
| crimson/vep.py | 77 | A 0 mins | A 100% |
| flake.lock | |||
| flake.nix | |||
| poetry.lock | |||
| poetry.toml | |||
| pyproject.toml | |||
| setup.cfg | |||
| tox.ini |