cBioPortal/clinical-timeline

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Function roundUp has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

  roundUp : function(numToRound, multiple) {
    var remainder = numToRound % multiple;
    if (multiple === 0 || remainder === 0) {
      return numToRound;
    } else{
Severity: Minor
Found in js/plugins/util.js - About 25 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function roundDown has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

  roundDown : function(numToRound, multiple) {
    var remainder = numToRound % multiple;
    if (multiple === 0 || remainder === 0) {
      return numToRound;
    } else{
Severity: Minor
Found in js/plugins/util.js - About 25 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

'start' is already defined.
Open

    var start = parseFloat(element.getAttribute("x"));
Severity: Minor
Found in js/plugins/zoom.js by eslint

disallow variable redeclaration (no-redeclare)

In JavaScript, it's possible to redeclare the same variable name using var. This can lead to confusion as to where the variable is actually declared and initialized.

Rule Details

This rule is aimed at eliminating variables that have multiple declarations in the same scope.

Examples of incorrect code for this rule:

/*eslint no-redeclare: "error"*/

var a = 3;
var a = 10;

Examples of correct code for this rule:

/*eslint no-redeclare: "error"*/

var a = 3;
// ...
a = 10;

Options

This rule takes one optional argument, an object with a boolean property "builtinGlobals". It defaults to false. If set to true, this rule also checks redeclaration of built-in globals, such as Object, Array, Number...

builtinGlobals

Examples of incorrect code for the { "builtinGlobals": true } option:

/*eslint no-redeclare: ["error", { "builtinGlobals": true }]*/

var Object = 0;

Examples of incorrect code for the { "builtinGlobals": true } option and the browser environment:

/*eslint no-redeclare: ["error", { "builtinGlobals": true }]*/
/*eslint-env browser*/

var top = 0;

The browser environment has many built-in global variables (for example, top). Some of built-in global variables cannot be redeclared. Source: http://eslint.org/docs/rules/

'zoomFactor' is already defined.
Open

        var zoomFactor = 2.0;
Severity: Minor
Found in js/plugins/zoom.js by eslint

disallow variable redeclaration (no-redeclare)

In JavaScript, it's possible to redeclare the same variable name using var. This can lead to confusion as to where the variable is actually declared and initialized.

Rule Details

This rule is aimed at eliminating variables that have multiple declarations in the same scope.

Examples of incorrect code for this rule:

/*eslint no-redeclare: "error"*/

var a = 3;
var a = 10;

Examples of correct code for this rule:

/*eslint no-redeclare: "error"*/

var a = 3;
// ...
a = 10;

Options

This rule takes one optional argument, an object with a boolean property "builtinGlobals". It defaults to false. If set to true, this rule also checks redeclaration of built-in globals, such as Object, Array, Number...

builtinGlobals

Examples of incorrect code for the { "builtinGlobals": true } option:

/*eslint no-redeclare: ["error", { "builtinGlobals": true }]*/

var Object = 0;

Examples of incorrect code for the { "builtinGlobals": true } option and the browser environment:

/*eslint no-redeclare: ["error", { "builtinGlobals": true }]*/
/*eslint-env browser*/

var top = 0;

The browser environment has many built-in global variables (for example, top). Some of built-in global variables cannot be redeclared. Source: http://eslint.org/docs/rules/

Don't make functions within a loop.
Open

      d3.select("#" + id).each(function (x) {time = x.starting_time;});
Severity: Minor
Found in js/plugins/zoom.js by eslint

Disallow Functions in Loops (no-loop-func)

Writing functions within loops tends to result in errors due to the way the function creates a closure around the loop. For example:

for (var i = 0; i < 10; i++) {
    funcs[i] = function() {
        return i;
    };
}

In this case, you would expect each function created within the loop to return a different number. In reality, each function returns 10, because that was the last value of i in the scope.

let or const mitigate this problem.

/*eslint-env es6*/

for (let i = 0; i < 10; i++) {
    funcs[i] = function() {
        return i;
    };
}

In this case, each function created within the loop returns a different number as expected.

Rule Details

This error is raised to highlight a piece of code that may not work as you expect it to and could also indicate a misunderstanding of how the language works. Your code may run without any problems if you do not fix this error, but in some situations it could behave unexpectedly.

Examples of incorrect code for this rule:

/*eslint no-loop-func: "error"*/
/*eslint-env es6*/

for (var i=10; i; i--) {
    (function() { return i; })();
}

while(i) {
    var a = function() { return i; };
    a();
}

do {
    function a() { return i; };
    a();
} while (i);

let foo = 0;
for (let i=10; i; i--) {
    // Bad, function is referencing block scoped variable in the outer scope.
    var a = function() { return foo; };
    a();
}

Examples of correct code for this rule:

/*eslint no-loop-func: "error"*/
/*eslint-env es6*/

var a = function() {};

for (var i=10; i; i--) {
    a();
}

for (var i=10; i; i--) {
    var a = function() {}; // OK, no references to variables in the outer scopes.
    a();
}

for (let i=10; i; i--) {
    var a = function() { return i; }; // OK, all references are referring to block scoped variables in the loop.
    a();
}

var foo = 100;
for (let i=10; i; i--) {
    var a = function() { return foo; }; // OK, all references are referring to never modified variables.
    a();
}
//... no modifications of foo after this loop ...

Source: http://eslint.org/docs/rules/

'end' is already defined.
Open

    var end = start + parseFloat(element.getAttribute("width"));
Severity: Minor
Found in js/plugins/zoom.js by eslint

disallow variable redeclaration (no-redeclare)

In JavaScript, it's possible to redeclare the same variable name using var. This can lead to confusion as to where the variable is actually declared and initialized.

Rule Details

This rule is aimed at eliminating variables that have multiple declarations in the same scope.

Examples of incorrect code for this rule:

/*eslint no-redeclare: "error"*/

var a = 3;
var a = 10;

Examples of correct code for this rule:

/*eslint no-redeclare: "error"*/

var a = 3;
// ...
a = 10;

Options

This rule takes one optional argument, an object with a boolean property "builtinGlobals". It defaults to false. If set to true, this rule also checks redeclaration of built-in globals, such as Object, Array, Number...

builtinGlobals

Examples of incorrect code for the { "builtinGlobals": true } option:

/*eslint no-redeclare: ["error", { "builtinGlobals": true }]*/

var Object = 0;

Examples of incorrect code for the { "builtinGlobals": true } option and the browser environment:

/*eslint no-redeclare: ["error", { "builtinGlobals": true }]*/
/*eslint-env browser*/

var top = 0;

The browser environment has many built-in global variables (for example, top). Some of built-in global variables cannot be redeclared. Source: http://eslint.org/docs/rules/

Don't make functions within a loop.
Open

      d3.select(id).each(function (e) {day = e.ending_time ? e.ending_time : e.starting_time;});
Severity: Minor
Found in js/plugins/zoom.js by eslint

Disallow Functions in Loops (no-loop-func)

Writing functions within loops tends to result in errors due to the way the function creates a closure around the loop. For example:

for (var i = 0; i < 10; i++) {
    funcs[i] = function() {
        return i;
    };
}

In this case, you would expect each function created within the loop to return a different number. In reality, each function returns 10, because that was the last value of i in the scope.

let or const mitigate this problem.

/*eslint-env es6*/

for (let i = 0; i < 10; i++) {
    funcs[i] = function() {
        return i;
    };
}

In this case, each function created within the loop returns a different number as expected.

Rule Details

This error is raised to highlight a piece of code that may not work as you expect it to and could also indicate a misunderstanding of how the language works. Your code may run without any problems if you do not fix this error, but in some situations it could behave unexpectedly.

Examples of incorrect code for this rule:

/*eslint no-loop-func: "error"*/
/*eslint-env es6*/

for (var i=10; i; i--) {
    (function() { return i; })();
}

while(i) {
    var a = function() { return i; };
    a();
}

do {
    function a() { return i; };
    a();
} while (i);

let foo = 0;
for (let i=10; i; i--) {
    // Bad, function is referencing block scoped variable in the outer scope.
    var a = function() { return foo; };
    a();
}

Examples of correct code for this rule:

/*eslint no-loop-func: "error"*/
/*eslint-env es6*/

var a = function() {};

for (var i=10; i; i--) {
    a();
}

for (var i=10; i; i--) {
    var a = function() {}; // OK, no references to variables in the outer scopes.
    a();
}

for (let i=10; i; i--) {
    var a = function() { return i; }; // OK, all references are referring to block scoped variables in the loop.
    a();
}

var foo = 100;
for (let i=10; i; i--) {
    var a = function() { return foo; }; // OK, all references are referring to never modified variables.
    a();
}
//... no modifications of foo after this loop ...

Source: http://eslint.org/docs/rules/

Don't make functions within a loop.
Open

          var row = tt.filter(function(x) {return x[0] === allLabelRows[j];})[0];
Severity: Minor
Found in js/clinicalTimeline.js by eslint

Disallow Functions in Loops (no-loop-func)

Writing functions within loops tends to result in errors due to the way the function creates a closure around the loop. For example:

for (var i = 0; i < 10; i++) {
    funcs[i] = function() {
        return i;
    };
}

In this case, you would expect each function created within the loop to return a different number. In reality, each function returns 10, because that was the last value of i in the scope.

let or const mitigate this problem.

/*eslint-env es6*/

for (let i = 0; i < 10; i++) {
    funcs[i] = function() {
        return i;
    };
}

In this case, each function created within the loop returns a different number as expected.

Rule Details

This error is raised to highlight a piece of code that may not work as you expect it to and could also indicate a misunderstanding of how the language works. Your code may run without any problems if you do not fix this error, but in some situations it could behave unexpectedly.

Examples of incorrect code for this rule:

/*eslint no-loop-func: "error"*/
/*eslint-env es6*/

for (var i=10; i; i--) {
    (function() { return i; })();
}

while(i) {
    var a = function() { return i; };
    a();
}

do {
    function a() { return i; };
    a();
} while (i);

let foo = 0;
for (let i=10; i; i--) {
    // Bad, function is referencing block scoped variable in the outer scope.
    var a = function() { return foo; };
    a();
}

Examples of correct code for this rule:

/*eslint no-loop-func: "error"*/
/*eslint-env es6*/

var a = function() {};

for (var i=10; i; i--) {
    a();
}

for (var i=10; i; i--) {
    var a = function() {}; // OK, no references to variables in the outer scopes.
    a();
}

for (let i=10; i; i--) {
    var a = function() { return i; }; // OK, all references are referring to block scoped variables in the loop.
    a();
}

var foo = 100;
for (let i=10; i; i--) {
    var a = function() { return foo; }; // OK, all references are referring to never modified variables.
    a();
}
//... no modifications of foo after this loop ...

Source: http://eslint.org/docs/rules/

Unexpected trailing comma.
Open

    end: end,
Severity: Minor
Found in js/plugins/zoom.js by eslint

require or disallow trailing commas (comma-dangle)

Trailing commas in object literals are valid according to the ECMAScript 5 (and ECMAScript 3!) spec. However, IE8 (when not in IE8 document mode) and below will throw an error when it encounters trailing commas in JavaScript.

var foo = {
    bar: "baz",
    qux: "quux",
};

Trailing commas simplify adding and removing items to objects and arrays, since only the lines you are modifying must be touched. Another argument in favor of trailing commas is that it improves the clarity of diffs when an item is added or removed from an object or array:

Less clear:

var foo = {
-    bar: "baz",
-    qux: "quux"
+    bar: "baz"
 };

More clear:

var foo = {
     bar: "baz",
-    qux: "quux",
 };

Rule Details

This rule enforces consistent use of trailing commas in object and array literals.

Options

This rule has a string option or an object option:

{
    "comma-dangle": ["error", "never"],
    // or
    "comma-dangle": ["error", {
        "arrays": "never",
        "objects": "never",
        "imports": "never",
        "exports": "never",
        "functions": "ignore",
    }]
}
  • "never" (default) disallows trailing commas
  • "always" requires trailing commas
  • "always-multiline" requires trailing commas when the last element or property is in a different line than the closing ] or } and disallows trailing commas when the last element or property is on the same line as the closing ] or }
  • "only-multiline" allows (but does not require) trailing commas when the last element or property is in a different line than the closing ] or } and disallows trailing commas when the last element or property is on the same line as the closing ] or }

Trailing commas in function declarations and function calls are valid syntax since ECMAScript 2017; however, the string option does not check these situations for backwards compatibility.

You can also use an object option to configure this rule for each type of syntax. Each of the following options can be set to "never", "always", "always-multiline", "only-multiline", or "ignore". The default for each option is "never" unless otherwise specified.

  • arrays is for array literals and array patterns of destructuring. (e.g. let [a,] = [1,];)
  • objects is for object literals and object patterns of destructuring. (e.g. let {a,} = {a: 1};)
  • imports is for import declarations of ES Modules. (e.g. import {a,} from "foo";)
  • exports is for export declarations of ES Modules. (e.g. export {a,};)
  • functions is for function declarations and function calls. (e.g. (function(a,){ })(b,);)
    functions is set to "ignore" by default for consistency with the string option.

never

Examples of incorrect code for this rule with the default "never" option:

/*eslint comma-dangle: ["error", "never"]*/

var foo = {
    bar: "baz",
    qux: "quux",
};

var arr = [1,2,];

foo({
  bar: "baz",
  qux: "quux",
});

Examples of correct code for this rule with the default "never" option:

/*eslint comma-dangle: ["error", "never"]*/

var foo = {
    bar: "baz",
    qux: "quux"
};

var arr = [1,2];

foo({
  bar: "baz",
  qux: "quux"
});

always

Examples of incorrect code for this rule with the "always" option:

/*eslint comma-dangle: ["error", "always"]*/

var foo = {
    bar: "baz",
    qux: "quux"
};

var arr = [1,2];

foo({
  bar: "baz",
  qux: "quux"
});

Examples of correct code for this rule with the "always" option:

/*eslint comma-dangle: ["error", "always"]*/

var foo = {
    bar: "baz",
    qux: "quux",
};

var arr = [1,2,];

foo({
  bar: "baz",
  qux: "quux",
});

always-multiline

Examples of incorrect code for this rule with the "always-multiline" option:

/*eslint comma-dangle: ["error", "always-multiline"]*/

var foo = {
    bar: "baz",
    qux: "quux"
};

var foo = { bar: "baz", qux: "quux", };

var arr = [1,2,];

var arr = [1,
    2,];

var arr = [
    1,
    2
];

foo({
  bar: "baz",
  qux: "quux"
});

Examples of correct code for this rule with the "always-multiline" option:

/*eslint comma-dangle: ["error", "always-multiline"]*/

var foo = {
    bar: "baz",
    qux: "quux",
};

var foo = {bar: "baz", qux: "quux"};
var arr = [1,2];

var arr = [1,
    2];

var arr = [
    1,
    2,
];

foo({
  bar: "baz",
  qux: "quux",
});

only-multiline

Examples of incorrect code for this rule with the "only-multiline" option:

/*eslint comma-dangle: ["error", "only-multiline"]*/

var foo = { bar: "baz", qux: "quux", };

var arr = [1,2,];

var arr = [1,
    2,];

Examples of correct code for this rule with the "only-multiline" option:

/*eslint comma-dangle: ["error", "only-multiline"]*/

var foo = {
    bar: "baz",
    qux: "quux",
};

var foo = {
    bar: "baz",
    qux: "quux"
};

var foo = {bar: "baz", qux: "quux"};
var arr = [1,2];

var arr = [1,
    2];

var arr = [
    1,
    2,
];

var arr = [
    1,
    2
];

foo({
  bar: "baz",
  qux: "quux",
});

foo({
  bar: "baz",
  qux: "quux"
});

functions

Examples of incorrect code for this rule with the {"functions": "never"} option:

/*eslint comma-dangle: ["error", {"functions": "never"}]*/

function foo(a, b,) {
}

foo(a, b,);
new foo(a, b,);

Examples of correct code for this rule with the {"functions": "never"} option:

/*eslint comma-dangle: ["error", {"functions": "never"}]*/

function foo(a, b) {
}

foo(a, b);
new foo(a, b);

Examples of incorrect code for this rule with the {"functions": "always"} option:

/*eslint comma-dangle: ["error", {"functions": "always"}]*/

function foo(a, b) {
}

foo(a, b);
new foo(a, b);

Examples of correct code for this rule with the {"functions": "always"} option:

/*eslint comma-dangle: ["error", {"functions": "always"}]*/

function foo(a, b,) {
}

foo(a, b,);
new foo(a, b,);

When Not To Use It

You can turn this rule off if you are not concerned with dangling commas. Source: http://eslint.org/docs/rules/

'canvas' is already defined.
Open

              var canvas = document.getElementById("canvas");
Severity: Minor
Found in js/plugins/exportTimeline.js by eslint

disallow variable redeclaration (no-redeclare)

In JavaScript, it's possible to redeclare the same variable name using var. This can lead to confusion as to where the variable is actually declared and initialized.

Rule Details

This rule is aimed at eliminating variables that have multiple declarations in the same scope.

Examples of incorrect code for this rule:

/*eslint no-redeclare: "error"*/

var a = 3;
var a = 10;

Examples of correct code for this rule:

/*eslint no-redeclare: "error"*/

var a = 3;
// ...
a = 10;

Options

This rule takes one optional argument, an object with a boolean property "builtinGlobals". It defaults to false. If set to true, this rule also checks redeclaration of built-in globals, such as Object, Array, Number...

builtinGlobals

Examples of incorrect code for the { "builtinGlobals": true } option:

/*eslint no-redeclare: ["error", { "builtinGlobals": true }]*/

var Object = 0;

Examples of incorrect code for the { "builtinGlobals": true } option and the browser environment:

/*eslint no-redeclare: ["error", { "builtinGlobals": true }]*/
/*eslint-env browser*/

var top = 0;

The browser environment has many built-in global variables (for example, top). Some of built-in global variables cannot be redeclared. Source: http://eslint.org/docs/rules/

'translate' is already defined.
Open

        var translate = (zoomFactor * width) / 4;
Severity: Minor
Found in js/plugins/zoom.js by eslint

disallow variable redeclaration (no-redeclare)

In JavaScript, it's possible to redeclare the same variable name using var. This can lead to confusion as to where the variable is actually declared and initialized.

Rule Details

This rule is aimed at eliminating variables that have multiple declarations in the same scope.

Examples of incorrect code for this rule:

/*eslint no-redeclare: "error"*/

var a = 3;
var a = 10;

Examples of correct code for this rule:

/*eslint no-redeclare: "error"*/

var a = 3;
// ...
a = 10;

Options

This rule takes one optional argument, an object with a boolean property "builtinGlobals". It defaults to false. If set to true, this rule also checks redeclaration of built-in globals, such as Object, Array, Number...

builtinGlobals

Examples of incorrect code for the { "builtinGlobals": true } option:

/*eslint no-redeclare: ["error", { "builtinGlobals": true }]*/

var Object = 0;

Examples of incorrect code for the { "builtinGlobals": true } option and the browser environment:

/*eslint no-redeclare: ["error", { "builtinGlobals": true }]*/
/*eslint-env browser*/

var top = 0;

The browser environment has many built-in global variables (for example, top). Some of built-in global variables cannot be redeclared. Source: http://eslint.org/docs/rules/

TODO found
Open

      // TODO: hack to handle problem when start is day 0 in d3-timeline
Severity: Minor
Found in js/clinicalTimeline.js by fixme
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