Sign upLogin

cBioPortal/iViz

View on GitHub
Star

Showing 156 of 1,095 total issues

Function stat has 66 lines of code (exceeds 25 allowed). Consider refactoring.
Open

    stat: function() {
      var _result = {};
      _result.origin = window.cohortIdsList;
      _result.filters = {};
      var self = this;
Severity: Major
Found in app/scripts/main.js - About 2 hrs to fix

    File barChartTemplate.js has 276 lines of code (exceeds 250 allowed). Consider refactoring.
    Open

    /**
 * Created by Karthik Kalletla on 4/6/16.
 */
'use strict';
(function(Vue, d3, dc, iViz, _, $, cbio) {
    Severity: Minor
    Found in app/scripts/views/components/barChart/barChartTemplate.js - About 2 hrs to fix

      Function getPatientClinicalData has 65 lines of code (exceeds 25 allowed). Consider refactoring.
      Open

          var getPatientClinicalData = function(self, attr_ids) {
      var def = new $.Deferred();
      var fetch_promises = [];
      var clinical_data = {};
      if (_.isArray(attr_ids)) {
      Severity: Major
      Found in app/scripts/model/dataProxy.js - About 2 hrs to fix

        Function getLayoutMatrix has 63 lines of code (exceeds 25 allowed). Consider refactoring.
        Open

              getLayoutMatrix: function(layoutMatrix, chart) {
        var self_ = this;
        var neighborIndex;
        var foundSpace = false;
        var layout = chart.layout;
        Severity: Major
        Found in app/scripts/views/mainTemplate.js - About 2 hrs to fix

          Function addChart has 62 lines of code (exceeds 25 allowed). Consider refactoring.
          Open

                      addChart: function(attrId) {
              var self_ = this;
              var attrData = self_.charts[attrId];
              var _attrAdded = false;
              var _group = {};
          Severity: Major
          Found in app/scripts/vueCore.js - About 2 hrs to fix

            Function getSampleClinicalData has 61 lines of code (exceeds 25 allowed). Consider refactoring.
            Open

                var getSampleClinicalData = function(self, attr_ids) {
      var def = new $.Deferred();
      var fetch_promises = [];
      var clinical_data = {};
      if (_.isArray(attr_ids)) {
            Severity: Major
            Found in app/scripts/model/dataProxy.js - About 2 hrs to fix

              Function ready has 61 lines of code (exceeds 25 allowed). Consider refactoring.
              Open

                  ready: function() {
      var _self = this;
      var callbacks = {};
      var attrId = this.attributes.attr_id;
              Severity: Major
              Found in app/scripts/views/components/dataTable/tableViewTemplate.js - About 2 hrs to fix

                Function getTickFormat has 61 lines of code (exceeds 25 allowed). Consider refactoring.
                Open

                    content.getTickFormat = function(v, logScale, data_, opts_) {
      var _returnValue = v;
      var index = 0;
      var e = d3.format('.1e');// convert small data to scientific notation format
      var formattedValue = '';
                Severity: Major
                Found in app/scripts/controller/util.js - About 2 hrs to fix

                  Function initDCPieChart has 60 lines of code (exceeds 25 allowed). Consider refactoring.
                  Open

                      function initDCPieChart() {
      if (v.opts.hasOwnProperty('chartId') &&
        v.data.hasOwnProperty('ndx') &&
        v.data.hasOwnProperty('attr_id')) {
        var width = v.opts.width || 130;
                  Severity: Major
                  Found in app/scripts/views/components/pieChart/pieChart.js - About 2 hrs to fix

                    Function setSelectedCases has 58 lines of code (exceeds 25 allowed). Consider refactoring.
                    Open

                                setSelectedCases: function(selectionType, selectedCases) {
              var radioVal = selectionType;
              var selectedCaseUIDs = [];
              var unmappedCaseIDs = [];
                    Severity: Major
                    Found in app/scripts/vueCore.js - About 2 hrs to fix

                      Function SurvivalChartProxy has 58 lines of code (exceeds 25 allowed). Consider refactoring.
                      Open

                        iViz.data.SurvivalChartProxy = function(_data, _attrId) {
    var datumArr_ = [];

    // convert raw data
    var _totalNum = 0;
                      Severity: Major
                      Found in app/scripts/views/components/survivalChart/proxy.js - About 2 hrs to fix

                        Function getConfigs has 58 lines of code (exceeds 25 allowed). Consider refactoring.
                        Open

                                function(self, fetch_promise) {
          if (_.isObject(configs_)) {
            fetch_promise.resolve(configs_);
          } else {
            $.getJSON(window.cbioResourceURL + 'configs.json?' + window.appVersion)
                        Severity: Major
                        Found in app/scripts/model/dataProxy.js - About 2 hrs to fix

                          Function getColors has 55 lines of code (exceeds 25 allowed). Consider refactoring.
                          Open

                              content.getColors = function() {
      return [
        '#2986e2', '#dc3912', '#f88508', '#109618',
        '#990099', '#0099c6', '#dd4477', '#66aa00',
        '#b82e2e', '#316395', '#994499', '#22aa99',
                          Severity: Major
                          Found in app/scripts/controller/util.js - About 2 hrs to fix

                            Function downloadCaseData has 53 lines of code (exceeds 25 allowed). Consider refactoring.
                            Open

                                downloadCaseData: function() {
      var _def = new $.Deferred();
      var sampleUIds_ = vm_.selectedsampleUIDs;
      var attr = {};
      var self = this;
                            Severity: Major
                            Found in app/scripts/main.js - About 2 hrs to fix

                              Function mergeGrps has 50 lines of code (exceeds 25 allowed). Consider refactoring.
                              Open

                                function mergeGrps(inputGrp1, inputGrp2) {
    var _ptr_1 = 0; // index indicator/pointer for group1
    var _ptr_2 = 0; // index indicator/pointer for group2

    // Stop when either pointer reach the end of the array
                              Severity: Minor
                              Found in app/scripts/views/components/survivalChart/components/logRankTest.js - About 2 hrs to fix

                                Function getMutData has 48 lines of code (exceeds 25 allowed). Consider refactoring.
                                Open

                                      getMutData: function(progressFunction) {
        var fetch_promise = new $.Deferred();
        var fetch_promises = [];
        var _mutDataStudyIdArr = [];
        var _mutationProfiles = this.mutationProfileIdsMap;
                                Severity: Minor
                                Found in app/scripts/model/dataProxy.js - About 1 hr to fix

                                  Function extractMutationData has 48 lines of code (exceeds 25 allowed). Consider refactoring.
                                  Open

                                      extractMutationData: function(_mutationData, _allSamples) {
      var _mutGeneMeta = {};
      var _allMutGenes = _.pluck(_mutationData, 'gene_symbol');
      var _mutGeneMetaIndex = 0;
      var self = this;
                                  Severity: Minor
                                  Found in app/scripts/main.js - About 1 hr to fix

                                    Function initReactTable has 47 lines of code (exceeds 25 allowed). Consider refactoring.
                                    Open

                                        function initReactTable(_reloadData, _selectedSampleUids, _selectedMap) {
      if (_reloadData) {
        reactTableData = initReactData(_selectedMap, _selectedSampleUids);
      }
      var _opts = {
                                    Severity: Minor
                                    Found in app/scripts/views/components/dataTable/tableView.js - About 1 hr to fix

                                      Function getCnaData has 45 lines of code (exceeds 25 allowed). Consider refactoring.
                                      Open

                                            getCnaData: function(progressFunction) {
        var _ajaxCnaData = {};
        var fetch_promises = [];
        var self = this;
        var _cnaProfiles = self.cnaProfileIdsMap;
                                      Severity: Minor
                                      Found in app/scripts/model/dataProxy.js - About 1 hr to fix

                                        Function updateLayoutMatrix has 45 lines of code (exceeds 25 allowed). Consider refactoring.
                                        Open

                                              updateLayoutMatrix: function() {
        var self_ = this;
        var _charts = _.values(this.$root.charts);
        _charts.sort(function(a, b) {
          return iViz.priorityManager.comparePriorities(a.priority, b.priority, false);
                                        Severity: Minor
                                        Found in app/scripts/views/mainTemplate.js - About 1 hr to fix
                                          Severity
                                          Category
                                          Status
                                          Source
                                          Language