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cBioPortal/iViz

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Showing 156 of 1,095 total issues

Function attachPlotlySelectedEvent has 32 lines of code (exceeds 25 allowed). Consider refactoring.
Open

      attachPlotlySelectedEvent: function() {
        var _self = this;
        var data = iViz.getGroupNdx(_self.attributes.group_id);

        document.getElementById(this.chartId).on('plotly_selected',
Severity: Minor
Found in app/scripts/views/components/scatterPlot/scatterPlotTemplate.js - About 1 hr to fix

    Function getNavCaseIdsStr has 32 lines of code (exceeds 25 allowed). Consider refactoring.
    Open

      function getNavCaseIdsStr(selectedCasesMap, selectedCaseIds, underURLLimit) {
    var result = {
      str: '',
      limit: -1
    };
    Severity: Minor
    Found in app/scripts/main.js - About 1 hr to fix

      Function initReactTable has 32 lines of code (exceeds 25 allowed). Consider refactoring.
      Open

          function initReactTable(targetId, inputData, opts) {
      var selectedRows = v.chart.filters();

      var opts_ = $.extend({
        input: inputData,
      Severity: Minor
      Found in app/scripts/views/components/pieChart/pieChart.js - About 1 hr to fix

        Function getCombinationPriority has 31 lines of code (exceeds 25 allowed). Consider refactoring.
        Open

            function getCombinationPriority(id) {
      var priority = _.clone(defaultPriority);
      if (id) {
        switch (id) {
        case 'DFS_SURVIVAL':
        Severity: Minor
        Found in app/scripts/controller/priorityManager.js - About 1 hr to fix

          Function GeneralChart has 31 lines of code (exceeds 25 allowed). Consider refactoring.
          Open

            iViz.view.component.GeneralChart = function(chartType) {
    'use strict';
    this.chartType = chartType || 'generalChart';
    this.dataForDownload = {};
    this.getCurrentCategories = function() {
          Severity: Minor
          Found in app/scripts/views/components/generalChart.js - About 1 hr to fix

            Function updateQtipContent has 29 lines of code (exceeds 25 allowed). Consider refactoring.
            Open

                  updateQtipContent: function() {
        if (this.mainDivQtip) {
          var self_ = this;
          var qtipContent = ['<div>'];
          var groups = this.chartInst.getGroups();
            Severity: Minor
            Found in app/scripts/views/components/survivalChart/template.js - About 1 hr to fix

              Function processTableData has 29 lines of code (exceeds 25 allowed). Consider refactoring.
              Open

                    processTableData: function(_data) {
        var data = iViz.getGroupNdx(this.attributes.group_id);
        var opts = {
          width: window.iViz.styles.vars.specialTables.width,
          height: window.iViz.styles.vars.specialTables.height,
              Severity: Minor
              Found in app/scripts/views/components/dataTable/tableViewTemplate.js - About 1 hr to fix

                Function getFilteredOriginStudies has 29 lines of code (exceeds 25 allowed). Consider refactoring.
                Open

                      getFilteredOriginStudies: function() {
        var selectedStudiesDisplayName = window.iviz.datamanager.getCancerStudyDisplayName(this.stats.origin);
        var filteredOriginStudies = {
          studies: [],
          count: 0
                Severity: Minor
                Found in app/scripts/views/components/virtualStudy/virtualStudy.js - About 1 hr to fix

                  Function init has 9 arguments (exceeds 4 allowed). Consider refactoring.
                  Open

                        function(_attributes, _opts, _selectedSamples, _selectedGenes,
               _data, _callbacks, _geneData, _dimension, _genePanelMap) {
                  Severity: Major
                  Found in app/scripts/views/components/dataTable/tableView.js - About 1 hr to fix

                    Function getSampleListsData has 28 lines of code (exceeds 25 allowed). Consider refactoring.
                    Open

                          getSampleListsData: function(sampleLists) {
        var def = new $.Deferred();
        var self = this;
        var data = [];
        if (_.isArray(sampleLists)) {
                    Severity: Minor
                    Found in app/scripts/model/dataProxy.js - About 1 hr to fix

                      Function getGeneticProfiles has 28 lines of code (exceeds 25 allowed). Consider refactoring.
                      Open

                              function(self, fetch_promise) {
          $.get(window.cbioURL + 'api/molecular-profiles?projection=SUMMARY&pageSize=100000&pageNumber=0&sortBy=molecularProfileId&direction=ASC')
            .done(function(data) {
              var profiles = {};
              _.each(data, function(profile) {
                      Severity: Minor
                      Found in app/scripts/model/dataProxy.js - About 1 hr to fix

                        Function initReactData has 27 lines of code (exceeds 25 allowed). Consider refactoring.
                        Open

                            function initReactData(_selectedMap, _selectedSampleUids) {
      attr_ = iViz.util.tableView.getAttributes(type_);
      var result = {
        data: [],
        attributes: attr_
                        Severity: Minor
                        Found in app/scripts/views/components/dataTable/tableView.js - About 1 hr to fix

                          Function update has 27 lines of code (exceeds 25 allowed). Consider refactoring.
                          Open

                              content_.update = function(groups, _chartId, _attrId) {
      // remove previous curves
      var _chartInst_ = this.chartInst_;
      var _newGroups = [];
      _chartInst_.removeCurves();
                          Severity: Minor
                          Found in app/scripts/views/components/survivalChart/main.js - About 1 hr to fix

                            Function getCurrentCategories has 27 lines of code (exceeds 25 allowed). Consider refactoring.
                            Open

                                content.getCurrentCategories = function(sortBy) {
      var groups = dcDimension.group().top(Infinity);
      var groupTypeId =
        data_.groupType === 'patient' ? 'patient_uid' : 'sample_uid';
      var selectedCases = _.pluck(dcDimension.top(Infinity), groupTypeId).sort();
                            Severity: Minor
                            Found in app/scripts/views/components/barChart/barChart.js - About 1 hr to fix

                              Function data has 27 lines of code (exceeds 25 allowed). Consider refactoring.
                              Open

                                  data: function() {
      return {
        chartDivId:
          iViz.util.getDefaultDomId('chartDivId', this.attributes.attr_id),
        resetBtnId:
                              Severity: Minor
                              Found in app/scripts/views/components/scatterPlot/scatterPlotTemplate.js - About 1 hr to fix

                                Function survivalChartCanvasDownload has 27 lines of code (exceeds 25 allowed). Consider refactoring.
                                Open

                                    function survivalChartCanvasDownload(data, downloadOpts) {
      var _svgElement;
      var _svgTitle;
      var _labelTextMaxLength = 0;
      var _numOfLabels = 0;
                                Severity: Minor
                                Found in app/scripts/controller/util.js - About 1 hr to fix

                                  Function initLine has 26 lines of code (exceeds 25 allowed). Consider refactoring.
                                  Open

                                        initLine: function() {
        var _self = this;
        var opts = _.extend({
          strokeWidth: 4,
          easing: 'easeInOut',
                                  Severity: Minor
                                  Found in app/scripts/views/components/progressBar/progressBar.js - About 1 hr to fix

                                    Function data has 26 lines of code (exceeds 25 allowed). Consider refactoring.
                                    Open

                                        data: function() {
      return {
        chartDivId:
          iViz.util.getDefaultDomId('chartDivId', this.attributes.attr_id),
        resetBtnId:
                                    Severity: Minor
                                    Found in app/scripts/views/components/barChart/barChartTemplate.js - About 1 hr to fix

                                      Function success has 26 lines of code (exceeds 25 allowed). Consider refactoring.
                                      Open

                                                    success: function(panels) {
                _.each(panels, function(panel) {
                  _.each(panel.genes, function(gene) {
                    if (!geneSampleMap[gene.hugoGeneSymbol]) {
                      geneSampleMap[gene.hugoGeneSymbol] = {
                                      Severity: Minor
                                      Found in app/scripts/model/dataProxy.js - About 1 hr to fix

                                        Function data has 26 lines of code (exceeds 25 allowed). Consider refactoring.
                                        Open

                                            data: function() {
      return {
        chartDivId: iViz.util.getDefaultDomId('chartDivId', this.attributes.attr_id),
        resetBtnId: iViz.util.getDefaultDomId('resetBtnId', this.attributes.attr_id),
        chartId: iViz.util.getDefaultDomId('chartId', this.attributes.attr_id),
                                        Severity: Minor
                                        Found in app/scripts/views/components/survivalChart/template.js - About 1 hr to fix
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