cBioPortal/iViz

Function data has 33 lines of code (exceeds 25 allowed). Consider refactoring.

Open

    data: function() {
      return {
        chartDivId:
          iViz.util.getDefaultDomId('chartDivId', this.attributes.attr_id),
        resetBtnId:

Function ready has 33 lines of code (exceeds 25 allowed). Consider refactoring.

Open

          }, ready: function() {
            $('#iviz-header-left-patient-select').qtip({
              content: {text: 'View the selected patients.'},
              style: {classes: 'qtip-light qtip-rounded qtip-shadow'},
              show: {event: 'mouseover'},

Function submitClick has 33 lines of code (exceeds 25 allowed). Consider refactoring.

Open

      submitClick: function(_selectedRowData) {
        var selectedSamplesUnion = [];
        var selectedRowsUids = _.pluck(_selectedRowData, 'uniqueid');

        this.madeSelection = true;

Function updateGrid has 33 lines of code (exceeds 25 allowed). Consider refactoring.

Open

      updateGrid: function(ChartsIds) {
        var self_ = this;
        if (this.grid_ === '') {
          self_.grid_ = new Packery(document.querySelector('.grid'), {
            itemSelector: '.grid-item',

Function ready has 33 lines of code (exceeds 25 allowed). Consider refactoring.

Open

    ready: function() {
      var _self = this;
      _self.showLoad = true;

      // make scatterplot can be closed even if ajax fails

Function attachPlotlySelectedEvent has 32 lines of code (exceeds 25 allowed). Consider refactoring.

Open

      attachPlotlySelectedEvent: function() {
        var _self = this;
        var data = iViz.getGroupNdx(_self.attributes.group_id);

        document.getElementById(this.chartId).on('plotly_selected',

Function getNavCaseIdsStr has 32 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  function getNavCaseIdsStr(selectedCasesMap, selectedCaseIds, underURLLimit) {
    var result = {
      str: '',
      limit: -1
    };

Function initReactTable has 32 lines of code (exceeds 25 allowed). Consider refactoring.

Open

    function initReactTable(targetId, inputData, opts) {
      var selectedRows = v.chart.filters();

      var opts_ = $.extend({
        input: inputData,

Similar blocks of code found in 2 locations. Consider refactoring.

Open

    _self.elem_.curves[_curveIndex].invisibleDots.selectAll('path')
      .data(_data)
      .enter()
      .append('svg:path')
      .on('mouseover', function(d) {

• Read up
  Read up

Similar blocks of code found in 2 locations. Consider refactoring.

Open

    _self.elem_.curves[_curveIndex].dots.selectAll('path')
      .data(_data)
      .enter()
      .append('path')
      .filter(function(d) {

• Read up
  Read up

Function getCombinationPriority has 31 lines of code (exceeds 25 allowed). Consider refactoring.

Open

    function getCombinationPriority(id) {
      var priority = _.clone(defaultPriority);
      if (id) {
        switch (id) {
        case 'DFS_SURVIVAL':

Function GeneralChart has 31 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  iViz.view.component.GeneralChart = function(chartType) {
    'use strict';
    this.chartType = chartType || 'generalChart';
    this.dataForDownload = {};
    this.getCurrentCategories = function() {

Identical blocks of code found in 2 locations. Consider refactoring.

Open

                var cohortName = tooltip.find('.cohort-name').val() ?
                  tooltip.find('.cohort-name').val() : tooltip.find('.cohort-name').attr('placeholder');

• Read up
  Read up

Identical blocks of code found in 2 locations. Consider refactoring.

Open

                var cohortName = tooltip.find('.cohort-name').val() ?
                  tooltip.find('.cohort-name').val() : tooltip.find('.cohort-name').attr('placeholder');

• Read up
  Read up

Function updateQtipContent has 29 lines of code (exceeds 25 allowed). Consider refactoring.

Open

      updateQtipContent: function() {
        if (this.mainDivQtip) {
          var self_ = this;
          var qtipContent = ['<div>'];
          var groups = this.chartInst.getGroups();

Function processTableData has 29 lines of code (exceeds 25 allowed). Consider refactoring.

Open

      processTableData: function(_data) {
        var data = iViz.getGroupNdx(this.attributes.group_id);
        var opts = {
          width: window.iViz.styles.vars.specialTables.width,
          height: window.iViz.styles.vars.specialTables.height,

Function getFilteredOriginStudies has 29 lines of code (exceeds 25 allowed). Consider refactoring.

Open

      getFilteredOriginStudies: function() {
        var selectedStudiesDisplayName = window.iviz.datamanager.getCancerStudyDisplayName(this.stats.origin);
        var filteredOriginStudies = {
          studies: [],
          count: 0

Function init has 9 arguments (exceeds 4 allowed). Consider refactoring.

Open

      function(_attributes, _opts, _selectedSamples, _selectedGenes,
               _data, _callbacks, _geneData, _dimension, _genePanelMap) {

Function getSampleListsData has 28 lines of code (exceeds 25 allowed). Consider refactoring.

Open

      getSampleListsData: function(sampleLists) {
        var def = new $.Deferred();
        var self = this;
        var data = [];
        if (_.isArray(sampleLists)) {

Function getGeneticProfiles has 28 lines of code (exceeds 25 allowed). Consider refactoring.

Open

        function(self, fetch_promise) {
          $.get(window.cbioURL + 'api/molecular-profiles?projection=SUMMARY&pageSize=100000&pageNumber=0&sortBy=molecularProfileId&direction=ASC')
            .done(function(data) {
              var profiles = {};
              _.each(data, function(profile) {