examples/tautomers/tautomer_utils.py
Function generate_simulation_and_driver
has a Cognitive Complexity of 46 (exceeds 5 allowed). Consider refactoring. Open
Open
def generate_simulation_and_driver(settings):
ofolder = settings['output']['dir']
input_pdbx_file = settings['input']['dir'] + '/' + settings['name'] + '.cif'
custom_xml = settings['input']['dir'] + '/' + settings['name'] + '.ffxml'
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Cognitive Complexity
Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.
A method's cognitive complexity is based on a few simple rules:
- Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
- Code is considered more complex for each "break in the linear flow of the code"
- Code is considered more complex when "flow breaking structures are nested"
Further reading
Function generate_simulation_and_driver
has 31 lines of code (exceeds 25 allowed). Consider refactoring. Open
Open
def generate_simulation_and_driver(settings):
ofolder = settings['output']['dir']
input_pdbx_file = settings['input']['dir'] + '/' + settings['name'] + '.cif'
custom_xml = settings['input']['dir'] + '/' + settings['name'] + '.ffxml'
Function run_main
has a Cognitive Complexity of 10 (exceeds 5 allowed). Consider refactoring. Open
Open
def run_main(simulation, driver, pdb_object, settings):
"""Main simulation loop."""
# Add reporters
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Cognitive Complexity
Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.
A method's cognitive complexity is based on a few simple rules:
- Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
- Code is considered more complex for each "break in the linear flow of the code"
- Code is considered more complex when "flow breaking structures are nested"