choderalab/yank

# Makefile for Sphinx documentation
#

# You can set these variables from the command line.
SPHINXOPTS    =
SPHINXBUILD   = sphinx-build
PAPER         =
BUILDDIR      = _build
TOOLSPATH            = ../tools/
EXAMPLEBUILD  = examples_rst.py

# Internal variables.
PAPEROPT_a4     = -D latex_paper_size=a4
PAPEROPT_letter = -D latex_paper_size=letter
ALLSPHINXOPTS   = -d $(BUILDDIR)/doctrees $(PAPEROPT_$(PAPER)) $(SPHINXOPTS) .
# the i18n builder cannot share the environment and doctrees with the others
I18NSPHINXOPTS  = $(PAPEROPT_$(PAPER)) $(SPHINXOPTS) .

.PHONY: help clean html dirhtml singlehtml pickle json htmlhelp qthelp devhelp epub latex latexpdf text man changes linkcheck doctest gettext

help:
    @echo "Please use \`make <target>' where <target> is one of"
    @echo "  html      to make standalone HTML files"
    @echo "  view      to re-install the package and then build the standalone HTML files"
    @echo "  dirhtml   to make HTML files named index.html in directories"
    @echo "  singlehtml to make a single large HTML file"
    @echo "  pickle    to make pickle files"
    @echo "  json      to make JSON files"
    @echo "  htmlhelp  to make HTML files and a HTML help project"
    @echo "  qthelp    to make HTML files and a qthelp project"
    @echo "  devhelp    to make HTML files and a Devhelp project"
    @echo "  epub       to make an epub"
    @echo "  latex     to make LaTeX files, you can set PAPER=a4 or PAPER=letter"
    @echo "  latexpdf   to make LaTeX files and run them through pdflatex"
    @echo "  text       to make text files"
    @echo "  man        to make manual pages"
    @echo "  changes   to make an overview of all changed/added/deprecated items"
    @echo "  linkcheck to check all external links for integrity"
    @echo "  doctest   to run all doctests embedded in the documentation (if enabled)"

view:
    cd .. && python setup.py install
    $(SPHINXBUILD) -b html $(ALLSPHINXOPTS) $(BUILDDIR)

html:    builddir
    $(SPHINXBUILD) -b html $(ALLSPHINXOPTS) $(BUILDDIR)
    @echo
    @echo "Build finished. The HTML pages are in $(BUILDDIR)"

builddir:
    mkdir -p $(BUILDDIR)
    @echo "Generating reST from examples folder"

clean:
    rm -rf $(BUILDDIR)/*
    rm -rf $(TOOLSPATH)/hash_dict.pickle
    rm -rf examples/generated/*.rst
    rm -rf api/generated/*.rst

dirhtml:
    $(SPHINXBUILD) -b dirhtml $(ALLSPHINXOPTS) $(BUILDDIR)/dirhtml
    @echo
    @echo "Build finished. The HTML pages are in $(BUILDDIR)/dirhtml."

singlehtml:
    $(SPHINXBUILD) -b singlehtml $(ALLSPHINXOPTS) $(BUILDDIR)/singlehtml
    @echo
    @echo "Build finished. The HTML page is in $(BUILDDIR)/singlehtml."

pickle:
    $(SPHINXBUILD) -b pickle $(ALLSPHINXOPTS) $(BUILDDIR)/pickle
    @echo
    @echo "Build finished; now you can process the pickle files."

json:
    $(SPHINXBUILD) -b json $(ALLSPHINXOPTS) $(BUILDDIR)/json
    @echo
    @echo "Build finished; now you can process the JSON files."

htmlhelp:
    $(SPHINXBUILD) -b htmlhelp $(ALLSPHINXOPTS) $(BUILDDIR)/htmlhelp
    @echo
    @echo "Build finished; now you can run HTML Help Workshop with the" \
          ".hhp project file in $(BUILDDIR)/htmlhelp."

qthelp:
    $(SPHINXBUILD) -b qthelp $(ALLSPHINXOPTS) $(BUILDDIR)/qthelp
    @echo
    @echo "Build finished; now you can run "qcollectiongenerator" with the" \
          ".qhcp project file in $(BUILDDIR)/qthelp, like this:"
    @echo "# qcollectiongenerator $(BUILDDIR)/qthelp/MDTraj.qhcp"
    @echo "To view the help file:"
    @echo "# assistant -collectionFile $(BUILDDIR)/qthelp/MDTraj.qhc"

devhelp:
    $(SPHINXBUILD) -b devhelp $(ALLSPHINXOPTS) $(BUILDDIR)/devhelp
    @echo
    @echo "Build finished."
    @echo "To view the help file:"
    @echo "# mkdir -p $$HOME/.local/share/devhelp/MDTraj"
    @echo "# ln -s $(BUILDDIR)/devhelp $$HOME/.local/share/devhelp/MDTraj"
    @echo "# devhelp"

epub:
    $(SPHINXBUILD) -b epub $(ALLSPHINXOPTS) $(BUILDDIR)/epub
    @echo
    @echo "Build finished. The epub file is in $(BUILDDIR)/epub."

latex: builddir
    $(SPHINXBUILD) -b latex $(ALLSPHINXOPTS) $(BUILDDIR)/latex
    @echo
    @echo "Build finished; the LaTeX files are in $(BUILDDIR)/latex."
    @echo "Run \`make' in that directory to run these through (pdf)latex" \
          "(use \`make latexpdf' here to do that automatically)."

latexpdf: builddir
    $(SPHINXBUILD) -b latex $(ALLSPHINXOPTS) $(BUILDDIR)/latex
    @echo "Running LaTeX files through pdflatex..."
    $(MAKE) -C $(BUILDDIR)/latex all-pdf
    @echo "pdflatex finished; the PDF files are in $(BUILDDIR)/latex."

text:
    $(SPHINXBUILD) -b text $(ALLSPHINXOPTS) $(BUILDDIR)/text
    @echo
    @echo "Build finished. The text files are in $(BUILDDIR)/text."

man:
    $(SPHINXBUILD) -b man $(ALLSPHINXOPTS) $(BUILDDIR)/man
    @echo
    @echo "Build finished. The manual pages are in $(BUILDDIR)/man."

texinfo:
    $(SPHINXBUILD) -b texinfo $(ALLSPHINXOPTS) $(BUILDDIR)/texinfo
    @echo
    @echo "Build finished. The Texinfo files are in $(BUILDDIR)/texinfo."
    @echo "Run \`make' in that directory to run these through makeinfo" \
          "(use \`make info' here to do that automatically)."

info:
    $(SPHINXBUILD) -b texinfo $(ALLSPHINXOPTS) $(BUILDDIR)/texinfo
    @echo "Running Texinfo files through makeinfo..."
    make -C $(BUILDDIR)/texinfo info
    @echo "makeinfo finished; the Info files are in $(BUILDDIR)/texinfo."

gettext:
    $(SPHINXBUILD) -b gettext $(I18NSPHINXOPTS) $(BUILDDIR)/locale
    @echo
    @echo "Build finished. The message catalogs are in $(BUILDDIR)/locale."

changes:
    $(SPHINXBUILD) -b changes $(ALLSPHINXOPTS) $(BUILDDIR)/changes
    @echo
    @echo "The overview file is in $(BUILDDIR)/changes."

linkcheck:
    $(SPHINXBUILD) -b linkcheck $(ALLSPHINXOPTS) $(BUILDDIR)/linkcheck
    @echo
    @echo "Link check complete; look for any errors in the above output " \
          "or in $(BUILDDIR)/linkcheck/output.txt."

doctest:
    $(SPHINXBUILD) -b doctest $(ALLSPHINXOPTS) $(BUILDDIR)/doctest
    @echo "Testing of doctests in the sources finished, look at the " \
          "results in $(BUILDDIR)/doctest/output.txt."