dictyBase/modware-annotation

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internal/repository/testdata/dicty_annotation.json

Summary

Maintainability
Test Coverage
{
  "graphs" : [ {
    "nodes" : [ {
      "id" : "http://purl.obolibrary.org/obo/DDANNO_0000003",
      "meta" : {
        "definition" : {
          "val" : "An annotation that expands the name annotation.",
          "xrefs" : [ "DDB:pf" ]
        },
        "basicPropertyValues" : [ {
          "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date",
          "val" : "2018-11-16T13:42:26Z"
        }, {
          "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace",
          "val" : "dicty_annotation"
        }, {
          "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by",
          "val" : "cybersiddhu"
        } ]
      },
      "type" : "CLASS",
      "lbl" : "name description"
    }, {
      "id" : "http://purl.obolibrary.org/obo/DDANNO_0000004",
      "meta" : {
        "definition" : {
          "val" : "A short human readable text.",
          "xrefs" : [ "DDB:pf" ]
        },
        "basicPropertyValues" : [ {
          "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date",
          "val" : "2018-11-16T13:44:29Z"
        }, {
          "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by",
          "val" : "cybersiddhu"
        }, {
          "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace",
          "val" : "dicty_annotation"
        } ]
      },
      "type" : "CLASS",
      "lbl" : "name"
    }, {
      "id" : "http://purl.obolibrary.org/obo/DDANNO_0000023",
      "meta" : {
        "definition" : {
          "val" : "For testing with backend database.",
          "xrefs" : [ ]
        },
        "basicPropertyValues" : [ {
          "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace",
          "val" : "dicty_annotation"
        }, {
          "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date",
          "val" : "2018-11-16T12:59:35Z"
        }, {
          "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by",
          "val" : "cybersiddhu"
        } ]
      },
      "type" : "CLASS",
      "lbl" : "decreased 3',5'-cyclic-GMP phosphodiesterase activity"
    }, {
      "id" : "http://purl.obolibrary.org/obo/DDANNO_0000001",
      "meta" : {
        "definition" : {
          "val" : "It represents an annotation of a biological entity at dictybase.",
          "xrefs" : [ "DDB:pf" ]
        },
        "xrefs" : [ {
          "val" : "dictyBase:https://dictybase.org"
        } ],
        "basicPropertyValues" : [ {
          "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace",
          "val" : "dicty_annotation"
        } ]
      },
      "type" : "CLASS",
      "lbl" : "dictybase annotation"
    }, {
      "id" : "http://purl.obolibrary.org/obo/DDANNO_0000002",
      "meta" : {
        "definition" : {
          "val" : "Free text description about any biological entity.",
          "xrefs" : [ "DDB:pf" ]
        },
        "synonyms" : [ {
          "pred" : "hasRelatedSynonym",
          "val" : "summary",
          "xrefs" : [ ]
        } ],
        "basicPropertyValues" : [ {
          "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace",
          "val" : "dicty_annotation"
        }, {
          "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by",
          "val" : "cybersiddhu"
        }, {
          "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date",
          "val" : "2018-11-16T12:59:35Z"
        } ]
      },
      "type" : "CLASS",
      "lbl" : "description"
    }, {
      "id" : "http://purl.obolibrary.org/obo/DDANNO_0000007",
      "meta" : {
        "definition" : {
          "val" : "An annotation that describes the state of a biological entity.",
          "xrefs" : [ "DDB:pf" ]
        },
        "basicPropertyValues" : [ {
          "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date",
          "val" : "2018-11-16T14:37:57Z"
        }, {
          "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace",
          "val" : "dicty_annotation"
        }, {
          "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by",
          "val" : "cybersiddhu"
        } ]
      },
      "type" : "CLASS",
      "lbl" : "status"
    }, {
      "id" : "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym",
      "type" : "PROPERTY",
      "lbl" : "has_exact_synonym"
    }, {
      "id" : "http://purl.obolibrary.org/obo/DDANNO_0000008",
      "meta" : {
        "definition" : {
          "val" : "A process by which a biocurator annotates information of biological entity.",
          "xrefs" : [ "DDB:pf" ]
        },
        "basicPropertyValues" : [ {
          "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date",
          "val" : "2018-11-16T15:04:29Z"
        }, {
          "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace",
          "val" : "dicty_annotation"
        }, {
          "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by",
          "val" : "cybersiddhu"
        } ]
      },
      "type" : "CLASS",
      "lbl" : "curation"
    }, {
      "id" : "http://purl.obolibrary.org/obo/DDANNO_0000005",
      "meta" : {
        "definition" : {
          "val" : "An annotation that describes the product of an biological entity.",
          "xrefs" : [ "DDB:pf" ]
        },
        "basicPropertyValues" : [ {
          "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace",
          "val" : "dicty_annotation"
        }, {
          "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by",
          "val" : "cybersiddhu"
        }, {
          "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date",
          "val" : "2018-11-16T14:33:56Z"
        } ]
      },
      "type" : "CLASS",
      "lbl" : "product"
    }, {
      "id" : "http://purl.obolibrary.org/obo/DDANNO_0000006",
      "meta" : {
        "definition" : {
          "val" : "An annotation that describes the expressed product of a gene.",
          "xrefs" : [ "DDB:pf" ]
        },
        "basicPropertyValues" : [ {
          "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace",
          "val" : "dicty_annotation"
        }, {
          "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by",
          "val" : "cybersiddhu"
        }, {
          "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date",
          "val" : "2018-11-16T14:35:46Z"
        } ]
      },
      "type" : "CLASS",
      "lbl" : "gene product"
    }, {
      "id" : "http://www.geneontology.org/formats/oboInOwl#hasDbXref",
      "type" : "PROPERTY",
      "lbl" : "database_cross_reference"
    }, {
      "id" : "http://purl.obolibrary.org/obo/DDANNO_0000009",
      "meta" : {
        "definition" : {
          "val" : "Curation status of a biological entity.",
          "xrefs" : [ "DDB:pf" ]
        },
        "basicPropertyValues" : [ {
          "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date",
          "val" : "2018-11-16T15:08:21Z"
        }, {
          "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace",
          "val" : "dicty_annotation"
        }, {
          "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by",
          "val" : "cybersiddhu"
        } ]
      },
      "type" : "CLASS",
      "lbl" : "curation status"
    }, {
      "id" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace",
      "type" : "PROPERTY",
      "lbl" : "has_obo_namespace"
    }, {
      "id" : "http://www.geneontology.org/formats/oboInOwl#hasOBOFormatVersion",
      "type" : "PROPERTY",
      "lbl" : "has_obo_format_version"
    }, {
      "id" : "http://purl.obolibrary.org/obo/IAO_0000115",
      "type" : "PROPERTY",
      "lbl" : "definition"
    }, {
      "id" : "http://purl.obolibrary.org/obo/DDANNO_0000021",
      "meta" : {
        "definition" : {
          "val" : "A curator defined name describing the strain.",
          "xrefs" : [ "DDB:pf" ]
        },
        "basicPropertyValues" : [ {
          "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by",
          "val" : "Petra"
        }, {
          "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date",
          "val" : "2019-06-12T16:24:07Z"
        }, {
          "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace",
          "val" : "dicty_annotation"
        } ]
      },
      "type" : "CLASS",
      "lbl" : "strain descriptor"
    }, {
      "id" : "http://purl.obolibrary.org/obo/DDANNO_0000022",
      "meta" : {
        "definition" : {
          "val" : "It represents type of genetic modification.",
          "xrefs" : [ ]
        },
        "basicPropertyValues" : [ {
          "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by",
          "val" : "cybersiddhu"
        }, {
          "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace",
          "val" : "dicty_annotation"
        }, {
          "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date",
          "val" : "2019-08-02T19:52:09Z"
        } ]
      },
      "type" : "CLASS",
      "lbl" : "mutant type"
    }, {
      "id" : "http://purl.obolibrary.org/obo/DDANNO_0000020",
      "meta" : {
        "definition" : {
          "val" : "Systematic name for a strain is either annotated from publication, or automatically added as DBS id.",
          "xrefs" : [ "DDB:pf" ]
        },
        "basicPropertyValues" : [ {
          "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by",
          "val" : "Petra"
        }, {
          "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date",
          "val" : "2019-06-12T16:12:35Z"
        }, {
          "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace",
          "val" : "dicty_annotation"
        } ]
      },
      "type" : "CLASS",
      "lbl" : "systematic name"
    }, {
      "id" : "http://purl.obolibrary.org/obo/DDANNO_0000014",
      "meta" : {
        "definition" : {
          "val" : "A note that will not be available for public consumption.",
          "xrefs" : [ "DDB:pf" ]
        },
        "basicPropertyValues" : [ {
          "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date",
          "val" : "2018-11-16T15:40:51Z"
        }, {
          "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace",
          "val" : "dicty_annotation"
        }, {
          "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by",
          "val" : "cybersiddhu"
        } ]
      },
      "type" : "CLASS",
      "lbl" : "private note"
    }, {
      "id" : "http://purl.obolibrary.org/obo/DDANNO_0000015",
      "meta" : {
        "definition" : {
          "val" : "Literature imported to dictybase.",
          "xrefs" : [ "DDB:pf" ]
        },
        "basicPropertyValues" : [ {
          "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by",
          "val" : "Petra"
        }, {
          "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date",
          "val" : "2019-06-07T09:29:41Z"
        }, {
          "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace",
          "val" : "dicty_annotation"
        } ]
      },
      "type" : "CLASS",
      "lbl" : "literature"
    }, {
      "id" : "http://purl.obolibrary.org/obo/DDANNO_0000012",
      "meta" : {
        "definition" : {
          "val" : "Note taken by a curator.",
          "xrefs" : [ "DDB:pf" ]
        },
        "basicPropertyValues" : [ {
          "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace",
          "val" : "dicty_annotation"
        }, {
          "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by",
          "val" : "cybersiddhu"
        }, {
          "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date",
          "val" : "2018-11-16T15:37:30Z"
        } ]
      },
      "type" : "CLASS",
      "lbl" : "curator note"
    }, {
      "id" : "http://purl.obolibrary.org/obo/DDANNO_0000013",
      "meta" : {
        "definition" : {
          "val" : "A note that is publicly available.",
          "xrefs" : [ "DDB:pf" ]
        },
        "basicPropertyValues" : [ {
          "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace",
          "val" : "dicty_annotation"
        }, {
          "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date",
          "val" : "2018-11-16T15:39:46Z"
        }, {
          "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by",
          "val" : "cybersiddhu"
        } ]
      },
      "type" : "CLASS",
      "lbl" : "public note"
    }, {
      "id" : "http://purl.obolibrary.org/obo/DDANNO_0000018",
      "meta" : {
        "definition" : {
          "val" : "The genetic constitution of an individual organism.",
          "xrefs" : [ "DDB:pf" ]
        },
        "basicPropertyValues" : [ {
          "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date",
          "val" : "2019-06-07T07:08:26Z"
        }, {
          "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace",
          "val" : "dicty_annotation"
        }, {
          "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by",
          "val" : "cybersiddhu"
        } ]
      },
      "type" : "CLASS",
      "lbl" : "genotype"
    }, {
      "id" : "http://purl.obolibrary.org/obo/DDANNO_0000019",
      "meta" : {
        "definition" : {
          "val" : "Synonym contains alternative names.",
          "xrefs" : [ "DDB:pf" ]
        },
        "basicPropertyValues" : [ {
          "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by",
          "val" : "Petra"
        }, {
          "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace",
          "val" : "dicty_annotation"
        }, {
          "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date",
          "val" : "2019-06-12T16:03:48Z"
        } ]
      },
      "type" : "CLASS",
      "lbl" : "synonym"
    }, {
      "id" : "http://purl.obolibrary.org/obo/DDANNO_0000016",
      "meta" : {
        "definition" : {
          "val" : "Identifier from PubMed citation.",
          "xrefs" : [ "DDB:pf" ]
        },
        "synonyms" : [ {
          "pred" : "hasExactSynonym",
          "val" : "PMID",
          "xrefs" : [ ]
        } ],
        "basicPropertyValues" : [ {
          "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date",
          "val" : "2019-06-07T09:30:42Z"
        }, {
          "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace",
          "val" : "dicty_annotation"
        }, {
          "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by",
          "val" : "Petra"
        } ]
      },
      "type" : "CLASS",
      "lbl" : "pubmed id"
    }, {
      "id" : "http://purl.obolibrary.org/obo/DDANNO_0000017",
      "meta" : {
        "definition" : {
          "val" : "Citation  by digital object identifier.",
          "xrefs" : [ "DDB:pf" ]
        },
        "basicPropertyValues" : [ {
          "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace",
          "val" : "dicty_annotation"
        }, {
          "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by",
          "val" : "Petra"
        }, {
          "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date",
          "val" : "2019-06-07T09:32:55Z"
        } ]
      },
      "type" : "CLASS",
      "lbl" : "DOI"
    }, {
      "id" : "http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym",
      "type" : "PROPERTY",
      "lbl" : "has_related_synonym"
    }, {
      "id" : "http://purl.obolibrary.org/obo/DDANNO_0000010",
      "meta" : {
        "definition" : {
          "val" : "A curator is a professional scientist who curates, collects, annotates, and validates information that is disseminated by biological and model Organism Databases.",
          "xrefs" : [ "DDB:pf" ]
        },
        "basicPropertyValues" : [ {
          "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by",
          "val" : "cybersiddhu"
        }, {
          "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date",
          "val" : "2018-11-16T15:25:04Z"
        }, {
          "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace",
          "val" : "dicty_annotation"
        } ]
      },
      "type" : "CLASS",
      "lbl" : "curator"
    }, {
      "id" : "http://purl.obolibrary.org/obo/DDANNO_0000011",
      "meta" : {
        "definition" : {
          "val" : "Free unstructured text or entry.",
          "xrefs" : [ "DDB:pf" ]
        },
        "basicPropertyValues" : [ {
          "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by",
          "val" : "cybersiddhu"
        }, {
          "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace",
          "val" : "dicty_annotation"
        }, {
          "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date",
          "val" : "2018-11-16T15:36:22Z"
        } ]
      },
      "type" : "CLASS",
      "lbl" : "note"
    } ],
    "edges" : [ {
      "sub" : "http://purl.obolibrary.org/obo/DDANNO_0000013",
      "pred" : "is_a",
      "obj" : "http://purl.obolibrary.org/obo/DDANNO_0000011"
    }, {
      "sub" : "http://purl.obolibrary.org/obo/DDANNO_0000003",
      "pred" : "is_a",
      "obj" : "http://purl.obolibrary.org/obo/DDANNO_0000002"
    }, {
      "sub" : "http://purl.obolibrary.org/obo/DDANNO_0000012",
      "pred" : "is_a",
      "obj" : "http://purl.obolibrary.org/obo/DDANNO_0000010"
    }, {
      "sub" : "http://purl.obolibrary.org/obo/DDANNO_0000002",
      "pred" : "is_a",
      "obj" : "http://purl.obolibrary.org/obo/DDANNO_0000001"
    }, {
      "sub" : "http://purl.obolibrary.org/obo/DDANNO_0000020",
      "pred" : "is_a",
      "obj" : "http://purl.obolibrary.org/obo/DDANNO_0000004"
    }, {
      "sub" : "http://purl.obolibrary.org/obo/DDANNO_0000015",
      "pred" : "is_a",
      "obj" : "http://purl.obolibrary.org/obo/DDANNO_0000001"
    }, {
      "sub" : "http://purl.obolibrary.org/obo/DDANNO_0000014",
      "pred" : "is_a",
      "obj" : "http://purl.obolibrary.org/obo/DDANNO_0000011"
    }, {
      "sub" : "http://purl.obolibrary.org/obo/DDANNO_0000016",
      "pred" : "is_a",
      "obj" : "http://purl.obolibrary.org/obo/DDANNO_0000015"
    }, {
      "sub" : "http://purl.obolibrary.org/obo/DDANNO_0000017",
      "pred" : "is_a",
      "obj" : "http://purl.obolibrary.org/obo/DDANNO_0000015"
    }, {
      "sub" : "http://purl.obolibrary.org/obo/DDANNO_0000004",
      "pred" : "is_a",
      "obj" : "http://purl.obolibrary.org/obo/DDANNO_0000001"
    }, {
      "sub" : "http://purl.obolibrary.org/obo/DDANNO_0000006",
      "pred" : "is_a",
      "obj" : "http://purl.obolibrary.org/obo/DDANNO_0000005"
    }, {
      "sub" : "http://purl.obolibrary.org/obo/DDANNO_0000009",
      "pred" : "is_a",
      "obj" : "http://purl.obolibrary.org/obo/DDANNO_0000008"
    }, {
      "sub" : "http://purl.obolibrary.org/obo/DDANNO_0000021",
      "pred" : "is_a",
      "obj" : "http://purl.obolibrary.org/obo/DDANNO_0000002"
    }, {
      "sub" : "http://purl.obolibrary.org/obo/DDANNO_0000005",
      "pred" : "is_a",
      "obj" : "http://purl.obolibrary.org/obo/DDANNO_0000001"
    }, {
      "sub" : "http://purl.obolibrary.org/obo/DDANNO_0000010",
      "pred" : "is_a",
      "obj" : "http://purl.obolibrary.org/obo/DDANNO_0000001"
    }, {
      "sub" : "http://purl.obolibrary.org/obo/DDANNO_0000018",
      "pred" : "is_a",
      "obj" : "http://purl.obolibrary.org/obo/DDANNO_0000001"
    }, {
      "sub" : "http://purl.obolibrary.org/obo/DDANNO_0000019",
      "pred" : "is_a",
      "obj" : "http://purl.obolibrary.org/obo/DDANNO_0000004"
    }, {
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