dmyersturnbull/mandos

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.dockerignore
.editorconfig
.github/ISSUE_TEMPLATE/bug.md
.github/ISSUE_TEMPLATE/config.yml
.github/ISSUE_TEMPLATE/documentation.md
.github/ISSUE_TEMPLATE/feature.md
.github/ISSUE_TEMPLATE/performance.md
.github/ISSUE_TEMPLATE/question.md
.github/ISSUE_TEMPLATE/security.md
.github/PULL_REQUEST_TEMPLATE.md
.github/dependabot.yml
.github/workflows/checks.yml
.github/workflows/publish.yml
.github/workflows/pull-test.yml
.github/workflows/push-main.yml
.gitignore
.pre-commit-config.yaml
.readthedocs.yml
CHANGELOG.md
CONTRIBUTING.md
Dockerfile
LICENSE.txt
README.md
SECURITY.md
docs/_templates/custom-base.rst
docs/_templates/custom-class-template.rst
docs/_templates/custom-module-template.rst
docs/api.rst
docs/binding.rst
docs/conf.py67
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docs/index.rst
docs/install.rst
docs/literature.rst
docs/misc.rst
docs/preprocessing.rst
docs/requirements.txt
docs/searches.rst
docs/settings.rst
docs/static/empty.txt
docs/sync.py22
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docs/taxa.rst
docs/traversal.rst
docs/tutorial.rst
mandos/__init__.py32
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mandos/analysis/__init__.py32
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mandos/analysis/_plot_utils.py196
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mandos/analysis/concordance.py89
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mandos/analysis/distances.py219
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mandos/analysis/enrichment.py215
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mandos/analysis/filtration.py19
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