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Module level import not at top of file
Open

from sqlalchemy.orm import sessionmaker
Severity: Minor
Found in src/triage/component/architect/utils.py by pep8

Place imports at the top of the file.

Always put imports at the top of the file, just after any module
comments and docstrings, and before module globals and constants.

Okay: import os
Okay: # this is a comment\nimport os
Okay: '''this is a module docstring'''\nimport os
Okay: r'''this is a module docstring'''\nimport os
Okay:
try:\n\timport x\nexcept ImportError:\n\tpass\nelse:\n\tpass\nimport y
Okay:
try:\n\timport x\nexcept ImportError:\n\tpass\nfinally:\n\tpass\nimport y
E402: a=1\nimport os
E402: 'One string'\n"Two string"\nimport os
E402: a=1\nfrom sys import x

Okay: if x:\n    import os

Module level import not at top of file
Open

import re
Severity: Minor
Found in src/triage/component/collate/collate.py by pep8

Place imports at the top of the file.

Always put imports at the top of the file, just after any module
comments and docstrings, and before module globals and constants.

Okay: import os
Okay: # this is a comment\nimport os
Okay: '''this is a module docstring'''\nimport os
Okay: r'''this is a module docstring'''\nimport os
Okay:
try:\n\timport x\nexcept ImportError:\n\tpass\nelse:\n\tpass\nimport y
Okay:
try:\n\timport x\nexcept ImportError:\n\tpass\nfinally:\n\tpass\nimport y
E402: a=1\nimport os
E402: 'One string'\n"Two string"\nimport os
E402: a=1\nfrom sys import x

Okay: if x:\n    import os

Module level import not at top of file
Open

from descriptors import cachedproperty
Severity: Minor
Found in src/triage/component/collate/collate.py by pep8

Place imports at the top of the file.

Always put imports at the top of the file, just after any module
comments and docstrings, and before module globals and constants.

Okay: import os
Okay: # this is a comment\nimport os
Okay: '''this is a module docstring'''\nimport os
Okay: r'''this is a module docstring'''\nimport os
Okay:
try:\n\timport x\nexcept ImportError:\n\tpass\nelse:\n\tpass\nimport y
Okay:
try:\n\timport x\nexcept ImportError:\n\tpass\nfinally:\n\tpass\nimport y
E402: a=1\nimport os
E402: 'One string'\n"Two string"\nimport os
E402: a=1\nfrom sys import x

Okay: if x:\n    import os

Line too long (106 > 88 characters)
Open

            query = ex.select(columns=columns, from_obj=make_sql_clause(self.from_obj, ex.text)).group_by(
Severity: Minor
Found in src/triage/component/collate/collate.py by pep8

Limit all lines to a maximum of 79 characters.

There are still many devices around that are limited to 80 character
lines; plus, limiting windows to 80 characters makes it possible to
have several windows side-by-side.  The default wrapping on such
devices looks ugly.  Therefore, please limit all lines to a maximum
of 79 characters. For flowing long blocks of text (docstrings or
comments), limiting the length to 72 characters is recommended.

Reports error E501.

Line too long (90 > 88 characters)
Open

            columns=[make_sql_clause(group, ex.column) for group in self.groups.values()],
Severity: Minor
Found in src/triage/component/collate/collate.py by pep8

Limit all lines to a maximum of 79 characters.

There are still many devices around that are limited to 80 character
lines; plus, limiting windows to 80 characters makes it possible to
have several windows side-by-side.  The default wrapping on such
devices looks ugly.  Therefore, please limit all lines to a maximum
of 79 characters. For flowing long blocks of text (docstrings or
comments), limiting the length to 72 characters is recommended.

Reports error E501.

Line too long (89 > 88 characters)
Open

                # the function, and see its available functions. we expect exactly one of
Severity: Minor
Found in src/triage/component/collate/collate.py by pep8

Limit all lines to a maximum of 79 characters.

There are still many devices around that are limited to 80 character
lines; plus, limiting windows to 80 characters makes it possible to
have several windows side-by-side.  The default wrapping on such
devices looks ugly.  Therefore, please limit all lines to a maximum
of 79 characters. For flowing long blocks of text (docstrings or
comments), limiting the length to 72 characters is recommended.

Reports error E501.

Line too long (90 > 88 characters)
Open

        # imputation starts from the state table and left joins into the aggregation table
Severity: Minor
Found in src/triage/component/collate/collate.py by pep8

Limit all lines to a maximum of 79 characters.

There are still many devices around that are limited to 80 character
lines; plus, limiting windows to 80 characters makes it possible to
have several windows side-by-side.  The default wrapping on such
devices looks ugly.  Therefore, please limit all lines to a maximum
of 79 characters. For flowing long blocks of text (docstrings or
comments), limiting the length to 72 characters is recommended.

Reports error E501.

Module level import not at top of file
Open

from triage.validation_primitives import (
Severity: Minor
Found in src/triage/component/collate/from_obj.py by pep8

Place imports at the top of the file.

Always put imports at the top of the file, just after any module
comments and docstrings, and before module globals and constants.

Okay: import os
Okay: # this is a comment\nimport os
Okay: '''this is a module docstring'''\nimport os
Okay: r'''this is a module docstring'''\nimport os
Okay:
try:\n\timport x\nexcept ImportError:\n\tpass\nelse:\n\tpass\nimport y
Okay:
try:\n\timport x\nexcept ImportError:\n\tpass\nfinally:\n\tpass\nimport y
E402: a=1\nimport os
E402: 'One string'\n"Two string"\nimport os
E402: a=1\nfrom sys import x

Okay: if x:\n    import os

Line too long (136 > 88 characters)
Open

            imp="1::SMALLINT" if self.catcol and self.null_cat_pattern in self.column else ("0::SMALLINT" if self.catcol else "0::REAL")
Severity: Minor
Found in src/triage/component/collate/imputations.py by pep8

Limit all lines to a maximum of 79 characters.

There are still many devices around that are limited to 80 character
lines; plus, limiting windows to 80 characters makes it possible to
have several windows side-by-side.  The default wrapping on such
devices looks ugly.  Therefore, please limit all lines to a maximum
of 79 characters. For flowing long blocks of text (docstrings or
comments), limiting the length to 72 characters is recommended.

Reports error E501.

Blank line contains whitespace
Open
Severity: Minor
Found in src/triage/component/collate/spacetime.py by pep8

Trailing whitespace is superfluous.

The warning returned varies on whether the line itself is blank,
for easier filtering for those who want to indent their blank lines.

Okay: spam(1)\n#
W291: spam(1) \n#
W293: class Foo(object):\n    \n    bang = 12

Line too long (104 > 88 characters)
Open

                        f"(select * from {self.from_obj}) from_obj join {self.state_table} cohort on ( "
Severity: Minor
Found in src/triage/component/collate/spacetime.py by pep8

Limit all lines to a maximum of 79 characters.

There are still many devices around that are limited to 80 character
lines; plus, limiting windows to 80 characters makes it possible to
have several windows side-by-side.  The default wrapping on such
devices looks ugly.  Therefore, please limit all lines to a maximum
of 79 characters. For flowing long blocks of text (docstrings or
comments), limiting the length to 72 characters is recommended.

Reports error E501.

Line too long (110 > 88 characters)
Open

                        f"Evaluating model {model_id} on {store.matrix_type.string_name} matrix {store.uuid} "
Severity: Minor
Found in src/triage/component/catwalk/__init__.py by pep8

Limit all lines to a maximum of 79 characters.

There are still many devices around that are limited to 80 character
lines; plus, limiting windows to 80 characters makes it possible to
have several windows side-by-side.  The default wrapping on such
devices looks ugly.  Therefore, please limit all lines to a maximum
of 79 characters. For flowing long blocks of text (docstrings or
comments), limiting the length to 72 characters is recommended.

Reports error E501.

Module level import not at top of file
Open

from sqlalchemy.orm import sessionmaker
Severity: Minor
Found in src/triage/component/catwalk/evaluation.py by pep8

Place imports at the top of the file.

Always put imports at the top of the file, just after any module
comments and docstrings, and before module globals and constants.

Okay: import os
Okay: # this is a comment\nimport os
Okay: '''this is a module docstring'''\nimport os
Okay: r'''this is a module docstring'''\nimport os
Okay:
try:\n\timport x\nexcept ImportError:\n\tpass\nelse:\n\tpass\nimport y
Okay:
try:\n\timport x\nexcept ImportError:\n\tpass\nfinally:\n\tpass\nimport y
E402: a=1\nimport os
E402: 'One string'\n"Two string"\nimport os
E402: a=1\nfrom sys import x

Okay: if x:\n    import os

Module level import not at top of file
Open

from triage.component.catwalk.storage import MatrixStore
Severity: Minor
Found in src/triage/component/catwalk/evaluation.py by pep8

Place imports at the top of the file.

Always put imports at the top of the file, just after any module
comments and docstrings, and before module globals and constants.

Okay: import os
Okay: # this is a comment\nimport os
Okay: '''this is a module docstring'''\nimport os
Okay: r'''this is a module docstring'''\nimport os
Okay:
try:\n\timport x\nexcept ImportError:\n\tpass\nelse:\n\tpass\nimport y
Okay:
try:\n\timport x\nexcept ImportError:\n\tpass\nfinally:\n\tpass\nimport y
E402: a=1\nimport os
E402: 'One string'\n"Two string"\nimport os
E402: a=1\nfrom sys import x

Okay: if x:\n    import os

Line too long (90 > 88 characters)
Open

        # if no bias config, no aequitas audits needed, so just return False at this point
Severity: Minor
Found in src/triage/component/catwalk/evaluation.py by pep8

Limit all lines to a maximum of 79 characters.

There are still many devices around that are limited to 80 character
lines; plus, limiting windows to 80 characters makes it possible to
have several windows side-by-side.  The default wrapping on such
devices looks ugly.  Therefore, please limit all lines to a maximum
of 79 characters. For flowing long blocks of text (docstrings or
comments), limiting the length to 72 characters is recommended.

Reports error E501.

Line too long (131 > 88 characters)
Open

                            f"{metric_def.metric} not defined for parameter {metric_def.parameter_combination} because all labels "
Severity: Minor
Found in src/triage/component/catwalk/evaluation.py by pep8

Limit all lines to a maximum of 79 characters.

There are still many devices around that are limited to 80 character
lines; plus, limiting windows to 80 characters makes it possible to
have several windows side-by-side.  The default wrapping on such
devices looks ugly.  Therefore, please limit all lines to a maximum
of 79 characters. For flowing long blocks of text (docstrings or
comments), limiting the length to 72 characters is recommended.

Reports error E501.

Line too long (113 > 88 characters)
Open

            f"Predictions from {model_id} sorted by worst case scenario, i.e. all negative and NULL labels first"
Severity: Minor
Found in src/triage/component/catwalk/evaluation.py by pep8

Limit all lines to a maximum of 79 characters.

There are still many devices around that are limited to 80 character
lines; plus, limiting windows to 80 characters makes it possible to
have several windows side-by-side.  The default wrapping on such
devices looks ugly.  Therefore, please limit all lines to a maximum
of 79 characters. For flowing long blocks of text (docstrings or
comments), limiting the length to 72 characters is recommended.

Reports error E501.

Line too long (94 > 88 characters)
Open

            In addition, the non-matrix attributes 'class_path' and 'parameters', referring to
Severity: Minor
Found in src/triage/component/catwalk/model_grouping.py by pep8

Limit all lines to a maximum of 79 characters.

There are still many devices around that are limited to 80 character
lines; plus, limiting windows to 80 characters makes it possible to
have several windows side-by-side.  The default wrapping on such
devices looks ugly.  Therefore, please limit all lines to a maximum
of 79 characters. For flowing long blocks of text (docstrings or
comments), limiting the length to 72 characters is recommended.

Reports error E501.

Module level import not at top of file
Open

import random
Severity: Minor
Found in src/triage/component/catwalk/model_trainers.py by pep8

Place imports at the top of the file.

Always put imports at the top of the file, just after any module
comments and docstrings, and before module globals and constants.

Okay: import os
Okay: # this is a comment\nimport os
Okay: '''this is a module docstring'''\nimport os
Okay: r'''this is a module docstring'''\nimport os
Okay:
try:\n\timport x\nexcept ImportError:\n\tpass\nelse:\n\tpass\nimport y
Okay:
try:\n\timport x\nexcept ImportError:\n\tpass\nfinally:\n\tpass\nimport y
E402: a=1\nimport os
E402: 'One string'\n"Two string"\nimport os
E402: a=1\nfrom sys import x

Okay: if x:\n    import os

Blank line contains whitespace
Open
Severity: Minor
Found in src/triage/component/catwalk/model_trainers.py by pep8

Trailing whitespace is superfluous.

The warning returned varies on whether the line itself is blank,
for easier filtering for those who want to indent their blank lines.

Okay: spam(1)\n#
W291: spam(1) \n#
W293: class Foo(object):\n    \n    bang = 12
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