| .codeclimate.yml | |
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| .coveragerc | |
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| .github/workflows/autorelease-default-env.sh | |
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| .github/workflows/autorelease-deploy.yml | |
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| .github/workflows/autorelease-gh-rel.yml | |
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| .github/workflows/autorelease-prep.yml | |
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| .github/workflows/unit-tests.yml | |
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| .gitignore | |
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| .readthedocs.yml | |
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| LICENSE | |
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| MANIFEST.in | |
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| README.md | |
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| bandit.yml | |
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| ci/mdtraj_dev.txt | |
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| ci/pip-pre-install.sh | |
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| contact_map/tests/concurrence.pdb | |
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| contact_map/tests/trajectory.pdb | |
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| environment.yml | |
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| examples/advanced_matplotlib.ipynb | |
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| examples/changing_defaults.ipynb | |
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| examples/comparing_different_structures.ipynb | |
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| examples/concurrences.ipynb | |
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| examples/contact_map.ipynb | |
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| examples/contact_trajectory.ipynb | |
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| examples/custom_plotting.ipynb | |
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| examples/data/4obe.pdb | |
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| examples/data/5v9o.pdb | |
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| examples/data/gsk3b_example.h5 | |
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| examples/exporting_data.ipynb | |
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| examples/performance.ipynb | |
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| postBuild | |
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| setup.cfg | |
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| autorelease_check.py | 23 |
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| ci/extract_requirements.py | 33 |
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| contact_map/__init__.py | 19 |
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| contact_map/_version.py | 3 |
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| contact_map/atom_indexer.py | 87 |
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| contact_map/concurrence.py | 227 |
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| contact_map/contact_count.py | 327 | A 35 mins |
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| contact_map/contact_map.py | 786 | A 2 hrs |
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| contact_map/contact_trajectory.py | 318 |
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| contact_map/dask_runner.py | 183 |
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| contact_map/fix_parameters.py | 79 |
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| contact_map/frequency_task.py | 120 |
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| contact_map/min_dist.py | 178 |
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| contact_map/plot_utils.py | 126 | A 25 mins |
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| contact_map/py_2_3.py | 10 |
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| contact_map/tests/__init__.py | 0 |
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| contact_map/tests/test_concurrence.py | 154 |
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| contact_map/tests/test_contact_count.py | 198 |
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