documentation/Helix.html
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<title>Class: Helix - Documentation</title>
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<h1 class="page-title">Class: Helix</h1>
<section>
<header>
<h2>Helix</h2>
<div class="class-description"><p>Helical secondary structure of a protein.</p></div>
</header>
<article>
<div class="container-overview">
<h2>Constructor</h2>
<h4 class="name" id="Helix"><span class="type-signature"></span>new Helix<span class="signature">(helixClass, init, term, serial, name, comment, length)</span><span class="type-signature"></span></h4>
<div class="description">
<p>Create a helix.</p>
</div>
<h5>Parameters:</h5>
<table class="params">
<thead>
<tr>
<th>Name</th>
<th>Type</th>
<th class="last">Description</th>
</tr>
</thead>
<tbody>
<tr>
<td class="name"><code>helixClass</code></td>
<td class="type">
<span class="param-type">number</span>
</td>
<td class="description last"><p>A helix class according to the
<a href="http://www.wwpdb.org/documentation/file-format-content/format33/sect5.html#HELIX">PDB Format</a>.</p></td>
</tr>
<tr>
<td class="name"><code>init</code></td>
<td class="type">
<span class="param-type">Residue</span>
</td>
<td class="description last"><p>Initial residue.</p></td>
</tr>
<tr>
<td class="name"><code>term</code></td>
<td class="type">
<span class="param-type">Residue</span>
</td>
<td class="description last"><p>Terminal residue.</p></td>
</tr>
<tr>
<td class="name"><code>serial</code></td>
<td class="type">
<span class="param-type">number</span>
</td>
<td class="description last"><p>Serial number of the helix (see PDB Format).</p></td>
</tr>
<tr>
<td class="name"><code>name</code></td>
<td class="type">
<span class="param-type">string</span>
</td>
<td class="description last"><p>Helix identifier (see PDB Format).</p></td>
</tr>
<tr>
<td class="name"><code>comment</code></td>
<td class="type">
<span class="param-type">string</span>
</td>
<td class="description last"><p>Comment about this helix (see PDB Format).</p></td>
</tr>
<tr>
<td class="name"><code>length</code></td>
<td class="type">
<span class="param-type">number</span>
</td>
<td class="description last"><p>Length of this helix, in residues (see PDB Format).</p></td>
</tr>
</tbody>
</table>
<dl class="details">
</dl>
</div>
<h3 class="subsection-title">Extends</h3>
<ul>
<li><a href="StructuralElement.html">StructuralElement</a></li>
</ul>
<h3 class="subsection-title">Members</h3>
<h4 class="name" id="comment"><span class="type-signature"></span>comment<span class="type-signature"> :string</span></h4>
<div class="description">
<p>Comment about this helix (see PDB Format).</p>
</div>
<dl class="details">
</dl>
<h4 class="name" id="generic"><span class="type-signature"></span>generic<span class="type-signature"> :<a href="StructuralElement.html#.Generic">StructuralElement.Generic</a></span></h4>
<div class="description">
<p>Generic secondary structure type.</p>
</div>
<dl class="details">
<dt class="tag-overrides">Overrides:</dt>
<dd class="tag-overrides"><ul class="dummy"><li>
<a href="StructuralElement.html#generic">StructuralElement#generic</a>
</li></ul></dd>
</dl>
<h4 class="name" id="init"><span class="type-signature"></span>init<span class="type-signature"> :Residue</span></h4>
<div class="description">
<p>Initial residue.</p>
</div>
<dl class="details">
<dt class="tag-overrides">Overrides:</dt>
<dd class="tag-overrides"><ul class="dummy"><li>
<a href="StructuralElement.html#init">StructuralElement#init</a>
</li></ul></dd>
</dl>
<h4 class="name" id="length"><span class="type-signature"></span>length<span class="type-signature"> :number</span></h4>
<div class="description">
<p>Length of this helix, in residues (see PDB Format).</p>
</div>
<dl class="details">
</dl>
<h4 class="name" id="name"><span class="type-signature"></span>name<span class="type-signature"> :string</span></h4>
<div class="description">
<p>Helix identifier (see PDB Format).</p>
</div>
<dl class="details">
</dl>
<h4 class="name" id="serial"><span class="type-signature"></span>serial<span class="type-signature"> :number</span></h4>
<div class="description">
<p>Serial number of the helix (see PDB Format).</p>
</div>
<dl class="details">
</dl>
<h4 class="name" id="term"><span class="type-signature"></span>term<span class="type-signature"> :Residue</span></h4>
<div class="description">
<p>Terminal residue.</p>
</div>
<dl class="details">
<dt class="tag-overrides">Overrides:</dt>
<dd class="tag-overrides"><ul class="dummy"><li>
<a href="StructuralElement.html#term">StructuralElement#term</a>
</li></ul></dd>
</dl>
<h4 class="name" id="type"><span class="type-signature"></span>type<span class="type-signature"> :<a href="StructuralElement.html#.Type">StructuralElement.Type</a></span></h4>
<div class="description">
<p>Secondary structure type.</p>
</div>
<dl class="details">
<dt class="tag-overrides">Overrides:</dt>
<dd class="tag-overrides"><ul class="dummy"><li>
<a href="StructuralElement.html#type">StructuralElement#type</a>
</li></ul></dd>
</dl>
</article>
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