documentation/SettingsObject.html
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<h1 class="page-title">Namespace: SettingsObject</h1>
<section>
<header>
<h2>SettingsObject</h2>
</header>
<article>
<div class="container-overview">
<dl class="details">
</dl>
</div>
<h3 class="subsection-title">Members</h3>
<h4 class="name" id=".palette"><span class="type-signature">(static) </span>palette<span class="type-signature"> :string</span></h4>
<div class="description">
<p>Palette used for molecule coloring.</p>
</div>
<dl class="details">
</dl>
<h4 class="name" id=".shadow"><span class="type-signature">(static) </span>shadow<span class="type-signature"></span></h4>
<div class="description">
<p>Shadows options.</p>
</div>
<h5 class="subsection-title">Properties:</h5>
<table class="props">
<thead>
<tr>
<th>Name</th>
<th>Type</th>
<th class="last">Description</th>
</tr>
</thead>
<tbody>
<tr>
<td class="name"><code>shadowMap</code></td>
<td class="type">
<span class="param-type">boolean</span>
</td>
<td class="description last"><p>enable/disable.</p></td>
</tr>
<tr>
<td class="name"><code>basic/percentage-closer</code></td>
<td class="type">
<span class="param-type">string</span>
</td>
<td class="description last"><p>filtering/non-uniform randomizing pcf.</p></td>
</tr>
<tr>
<td class="name"><code>radius</code></td>
<td class="type">
<span class="param-type">number</span>
</td>
<td class="description last"><p>for percentage-closer filtering.</p></td>
</tr>
</tbody>
</table>
<dl class="details">
</dl>
<h4 class="name" id="ao"><span class="type-signature"></span>ao<span class="type-signature"> :boolean</span></h4>
<div class="description">
<p>Ambient Occlusion special effect.</p>
</div>
<dl class="details">
</dl>
<h4 class="name" id="aromatic"><span class="type-signature"></span>aromatic<span class="type-signature"> :boolean</span></h4>
<div class="description">
<p>Detect aromatic loops.</p>
</div>
<dl class="details">
</dl>
<h4 class="name" id="autobuild"><span class="type-signature"></span>autobuild<span class="type-signature"> :boolean</span></h4>
<dl class="details">
</dl>
<h4 class="name" id="autoRotation"><span class="type-signature"></span>autoRotation<span class="type-signature"> :number</span></h4>
<div class="description">
<p>Auto-rotation with constant speed.</p>
</div>
<dl class="details">
</dl>
<h4 class="name" id="autoRotationAxisFixed"><span class="type-signature"></span>autoRotationAxisFixed<span class="type-signature"> :boolean</span></h4>
<div class="description">
<p>Auto-rotation axis.</p>
<ul>
<li>true: complex auto-rotation is about vertical axis</li>
<li>false: rotation axis is defined by last user rotation</li>
</ul>
</div>
<dl class="details">
</dl>
<h4 class="name" id="axes"><span class="type-signature"></span>axes<span class="type-signature"> :boolean</span></h4>
<dl class="details">
</dl>
<h4 class="name" id="colorers"><span class="type-signature"></span>colorers<span class="type-signature"> :Object.<string, object></span></h4>
<div class="description">
<p>Default options for all available colorers.
Use <code>Colorer.id</code> as a dictionary key to access colorer options.</p>
<p>Usually you don't need to override these settings. You may specify colorer options as a parameter during
<code>Colorer</code> construction.</p>
<p>Not all colorers have options.</p>
</div>
<h5 class="subsection-title">Properties:</h5>
<table class="props">
<thead>
<tr>
<th>Name</th>
<th>Type</th>
<th class="last">Description</th>
</tr>
</thead>
<tbody>
<tr>
<td class="name"><code>EL</code></td>
<td class="type">
<span class="param-type"><a href="global.html#ElementColorerOptions">ElementColorerOptions</a></span>
</td>
<td class="description last"><p>Element colorer options.</p></td>
</tr>
<tr>
<td class="name"><code>SQ</code></td>
<td class="type">
<span class="param-type"><a href="global.html#SequenceColorerOptions">SequenceColorerOptions</a></span>
</td>
<td class="description last"><p>Sequence colorer options.</p></td>
</tr>
<tr>
<td class="name"><code>MO</code></td>
<td class="type">
<span class="param-type"><a href="global.html#MoleculeColorerOptions">MoleculeColorerOptions</a></span>
</td>
<td class="description last"><p>Molecule colorer options.</p></td>
</tr>
<tr>
<td class="name"><code>UN</code></td>
<td class="type">
<span class="param-type"><a href="global.html#UniformColorerOptions">UniformColorerOptions</a></span>
</td>
<td class="description last"><p>Uniform colorer options.</p></td>
</tr>
<tr>
<td class="name"><code>CO</code></td>
<td class="type">
<span class="param-type"><a href="global.html#ConditionalColorerOptions">ConditionalColorerOptions</a></span>
</td>
<td class="description last"><p>Conditional colorer options.</p></td>
</tr>
<tr>
<td class="name"><code>TM</code></td>
<td class="type">
<span class="param-type"><a href="global.html#TemperatureColorerOptions">TemperatureColorerOptions</a></span>
</td>
<td class="description last"><p>Temperature colorer options.</p></td>
</tr>
<tr>
<td class="name"><code>OC</code></td>
<td class="type">
<span class="param-type"><a href="global.html#OccupancyColorerOptions">OccupancyColorerOptions</a></span>
</td>
<td class="description last"><p>Occupancy colorer options.</p></td>
</tr>
<tr>
<td class="name"><code>HY</code></td>
<td class="type">
<span class="param-type"><a href="global.html#HydrophobicityColorerOptions">HydrophobicityColorerOptions</a></span>
</td>
<td class="description last"><p>Hydrophobicity colorer options.</p></td>
</tr>
</tbody>
</table>
<dl class="details">
</dl>
<h4 class="name" id="editing"><span class="type-signature"></span>editing<span class="type-signature"> :boolean</span></h4>
<div class="description">
<p>Make "component" and "fragment" editing modes available.</p>
</div>
<dl class="details">
</dl>
<h4 class="name" id="fbxprec"><span class="type-signature"></span>fbxprec<span class="type-signature"> :number</span></h4>
<div class="description">
<p>Set fbx output precision.</p>
</div>
<dl class="details">
</dl>
<h4 class="name" id="fog"><span class="type-signature"></span>fog<span class="type-signature"> :boolean</span></h4>
<dl class="details">
</dl>
<h4 class="name" id="fogFarFactor"><span class="type-signature"></span>fogFarFactor<span class="type-signature"> :number</span></h4>
<dl class="details">
</dl>
<h4 class="name" id="fogNearFactor"><span class="type-signature"></span>fogNearFactor<span class="type-signature"> :number</span></h4>
<dl class="details">
</dl>
<h4 class="name" id="fps"><span class="type-signature"></span>fps<span class="type-signature"> :boolean</span></h4>
<dl class="details">
</dl>
<h4 class="name" id="fxaa"><span class="type-signature"></span>fxaa<span class="type-signature"> :boolean</span></h4>
<div class="description">
<p>Anti-aliasing.</p>
</div>
<dl class="details">
</dl>
<h4 class="name" id="interpolateViews"><span class="type-signature"></span>interpolateViews<span class="type-signature"> :boolean</span></h4>
<div class="description">
<p>Enable smooth transition between views</p>
</div>
<dl class="details">
</dl>
<h4 class="name" id="maxfps"><span class="type-signature"></span>maxfps<span class="type-signature"> :number</span></h4>
<div class="description">
<p>Set maximum fps for animation.</p>
</div>
<dl class="details">
</dl>
<h4 class="name" id="modes"><span class="type-signature"></span>modes<span class="type-signature"> :Object.<string, object></span></h4>
<div class="description">
<p>Default options for all available modes.
Use <code>Mode.id</code> as a dictionary key to access mode options.</p>
<p>Usually you don't need to override these settings. You may specify mode options as a parameter during
<code>Mode</code> construction.</p>
</div>
<h5 class="subsection-title">Properties:</h5>
<table class="props">
<thead>
<tr>
<th>Name</th>
<th>Type</th>
<th class="last">Description</th>
</tr>
</thead>
<tbody>
<tr>
<td class="name"><code>LN</code></td>
<td class="type">
<span class="param-type"><a href="global.html#LinesModeOptions">LinesModeOptions</a></span>
</td>
<td class="description last"><p>Lines mode options.</p></td>
</tr>
<tr>
<td class="name"><code>LC</code></td>
<td class="type">
<span class="param-type"><a href="global.html#LicoriceModeOptions">LicoriceModeOptions</a></span>
</td>
<td class="description last"><p>Licorice mode options.</p></td>
</tr>
<tr>
<td class="name"><code>BS</code></td>
<td class="type">
<span class="param-type"><a href="global.html#BallsAndSticksModeOptions">BallsAndSticksModeOptions</a></span>
</td>
<td class="description last"><p>Balls and Sticks mode options.</p></td>
</tr>
<tr>
<td class="name"><code>VW</code></td>
<td class="type">
<span class="param-type"><a href="global.html#VanDerWaalsModeOptions">VanDerWaalsModeOptions</a></span>
</td>
<td class="description last"><p>Van der Waals mode options.</p></td>
</tr>
<tr>
<td class="name"><code>TR</code></td>
<td class="type">
<span class="param-type"><a href="global.html#TraceModeOptions">TraceModeOptions</a></span>
</td>
<td class="description last"><p>Trace mode options.</p></td>
</tr>
<tr>
<td class="name"><code>TU</code></td>
<td class="type">
<span class="param-type"><a href="global.html#TubeModeOptions">TubeModeOptions</a></span>
</td>
<td class="description last"><p>Tube mode options.</p></td>
</tr>
<tr>
<td class="name"><code>CA</code></td>
<td class="type">
<span class="param-type"><a href="global.html#CartoonModeOptions">CartoonModeOptions</a></span>
</td>
<td class="description last"><p>Cartoon mode options.</p></td>
</tr>
<tr>
<td class="name"><code>QS</code></td>
<td class="type">
<span class="param-type"><a href="global.html#QuickSurfaceModeOptions">QuickSurfaceModeOptions</a></span>
</td>
<td class="description last"><p>Contact Surface mode options.</p></td>
</tr>
<tr>
<td class="name"><code>SA</code></td>
<td class="type">
<span class="param-type"><a href="global.html#IsoSurfaceSASModeOptions">IsoSurfaceSASModeOptions</a></span>
</td>
<td class="description last"><p>Solvent Accessible Surface mode options.</p></td>
</tr>
<tr>
<td class="name"><code>SE</code></td>
<td class="type">
<span class="param-type"><a href="global.html#IsoSurfaceSESModeOptions">IsoSurfaceSESModeOptions</a></span>
</td>
<td class="description last"><p>Solvent Excluded Surface mode options.</p></td>
</tr>
<tr>
<td class="name"><code>CS</code></td>
<td class="type">
<span class="param-type"><a href="global.html#ContactSurfaceModeOptions">ContactSurfaceModeOptions</a></span>
</td>
<td class="description last"><p>Contact Surface mode options.</p></td>
</tr>
<tr>
<td class="name"><code>TX</code></td>
<td class="type">
<span class="param-type"><a href="global.html#TextModeOptions">TextModeOptions</a></span>
</td>
<td class="description last"><p>Text mode options.</p></td>
</tr>
<tr>
<td class="name"><code>VD</code></td>
<td class="type">
<span class="param-type"><a href="global.html#VolumeDensityModeOptions">VolumeDensityModeOptions</a></span>
</td>
<td class="description last"><p>Volume Density mode options.</p></td>
</tr>
</tbody>
</table>
<dl class="details">
</dl>
<h4 class="name" id="outline"><span class="type-signature"></span>outline<span class="type-signature"> :boolean</span></h4>
<div class="description">
<p>Outline depths</p>
</div>
<dl class="details">
</dl>
<h4 class="name" id="pick"><span class="type-signature"></span>pick<span class="type-signature"> :string</span></h4>
<div class="description">
<p>Set picking mode ('atom', 'residue', 'chain', 'molecule').</p>
</div>
<dl class="details">
</dl>
<h4 class="name" id="picking"><span class="type-signature"></span>picking<span class="type-signature"> :boolean</span></h4>
<div class="description">
<p>Enable picking atoms & residues with left mouse button or touch.</p>
</div>
<dl class="details">
</dl>
<h4 class="name" id="singleUnit"><span class="type-signature"></span>singleUnit<span class="type-signature"> :boolean</span></h4>
<div class="description">
<p>Load only one biological unit from all those described in PDB file.</p>
</div>
<dl class="details">
</dl>
<h4 class="name" id="stereo"><span class="type-signature"></span>stereo<span class="type-signature"> :string</span></h4>
<div class="description">
<p>Set stereo mode ('NONE', 'SIMPLE', 'DISTORTED', 'ANAGLYPH', 'WEBVR').</p>
</div>
<dl class="details">
</dl>
<h4 class="name" id="suspendRender"><span class="type-signature"></span>suspendRender<span class="type-signature"> :boolean</span></h4>
<dl class="details">
</dl>
<h4 class="name" id="translationSpeed"><span class="type-signature"></span>translationSpeed<span class="type-signature"> :number</span></h4>
<div class="description">
<p>Mouse translation speed.</p>
</div>
<dl class="details">
</dl>
<h4 class="name" id="transparency"><span class="type-signature"></span>transparency<span class="type-signature"> :string</span></h4>
<div class="description">
<p>Set transparency mode ('standard', 'prepass').</p>
</div>
<dl class="details">
</dl>
<h4 class="name" id="zooming"><span class="type-signature"></span>zooming<span class="type-signature"> :boolean</span></h4>
<div class="description">
<p>Enable zooming with mouse wheel or pinch gesture.</p>
</div>
<dl class="details">
</dl>
<h4 class="name" id="zSprites"><span class="type-signature"></span>zSprites<span class="type-signature"> :boolean</span></h4>
<div class="description">
<p>Switch using of z-sprites for sphere and cylinder geometry</p>
</div>
<dl class="details">
</dl>
</article>
</section>
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