Function i has 50 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  function i(r) {
    var t = typeof r
    if ('string' === t) {
      var e = n(r)
      if (32 > e) return 1 + e

Function _collectCylindersInfo has 50 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  _collectCylindersInfo(mesh) {
    const {
      geometry: {
        attributes: { position, color, color2 },
        index

Function begin has 50 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  begin() {
    const visual = this._complexVisual
    const selection = this._complexVisual.getSelectionGeo()

    const atoms = this._getSelectionBorderAtoms()

Function view has 50 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  view(expression) {
    const VIEW_VERSION = '1'
    const self = this
    const { pivot } = this._gfx
    let transform = []

Function getSubset has 49 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  getSubset(chunkIndices) {
    const info = _prepareCylinderInfo(chunkIndices)
    const cylinderIndices = info.indices
    const instanceCount = cylinderIndices.length
    const geom = new InstancedBufferGeometry()

Function _forEachVoxelWithinRadiusSimple has 49 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  _forEachVoxelWithinRadiusSimple(center, radius, process) {
    const xRange = VoxelWorld._xRange
    const yRange = VoxelWorld._yRange
    const zRange = VoxelWorld._zRange
    const vCenter = VoxelWorld._vCenter

Function _renderVolume has 49 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  _renderVolume(volumeVisual, camera, dstBuf, tmpBuf1, tmpBuf2, tmpBuf3) {
    const volumeBFMat = new VolumeMaterial.BackFacePosMaterial()
    const volumeFFMat = new VolumeMaterial.FrontFacePosMaterial()
    const cubeOffsetMat = new Matrix4().makeTranslation(0.5, 0.5, 0.5)
    const world2colorMat = new Matrix4()

Function _updateSecStructure has 49 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  _updateSecStructure(complex, residue, groupData) {
    const helixClasses = [3, -1, 1, -1, 5]

    if (!isUndefined(groupData) && groupData.secStruct === this._ssType) {
      residue._secondary = this._ssStruct

Function getAltObj has 49 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  getAltObj() {
    const res = {
      objects: [],
      pivot: new Vector3(0, 0, 0)
    }

Function next has 48 lines of code (exceeds 25 allowed). Consider refactoring.

Open

      next: function next() {
        if (this.done) {
          return this.EOF;
        }
        if (!this._input) {

Function next has 48 lines of code (exceeds 25 allowed). Consider refactoring.

Open

      next: function next() {
        if (this.done) {
          return this.EOF;
        }
        if (!this._input) {

Function _btnToolbarClick has 48 lines of code (exceeds 25 allowed). Consider refactoring.

Open

    function _btnToolbarClick() {
      if (this.classList.contains('disabled')) {
        return
      }

Function _calcPoints has 48 lines of code (exceeds 25 allowed). Consider refactoring.

Open

function _calcPoints(residues, firstIdx, lastIdx, boundaries) {
  const left = boundaries.start
  const right = boundaries.end
  function _prevIdx(idx) {
    return idx > left && residues[idx - 1]._isValid ? idx - 1 : idx

Function _extractSheets has 48 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  _extractSheets(complex, sheetData) {
    const { asymDict } = this
    if (
      !sheetData.sheet_id ||
      !sheetData.id ||

Function resolveSourceShortcut has 48 lines of code (exceeds 25 allowed). Consider refactoring.

Open

function resolveSourceShortcut(source, opts) {
  if (!isString(source)) {
    return source
  }

Function wrapNativeSuper has a Cognitive Complexity of 15 (exceeds 5 allowed). Consider refactoring.

Open

var wrapNativeSuper = createCommonjsModule(function (module) {
function _wrapNativeSuper(Class) {
  var _cache = typeof Map === "function" ? new Map() : undefined;
  module.exports = _wrapNativeSuper = function _wrapNativeSuper(Class) {
    if (Class === null || !isNativeFunction(Class)) return Class;

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Function wrapNativeSuper has a Cognitive Complexity of 15 (exceeds 5 allowed). Consider refactoring.

Open

var wrapNativeSuper = createCommonjsModule(function (module) {
function _wrapNativeSuper(Class) {
  var _cache = typeof Map === "function" ? new Map() : undefined;
  module.exports = _wrapNativeSuper = function _wrapNativeSuper(Class) {
    if (Class === null || !isNativeFunction(Class)) return Class;

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Function _updateReprList has a Cognitive Complexity of 15 (exceeds 5 allowed). Consider refactoring.

Open

Menu.prototype._updateReprList = function () {
  const self = this

  function _createOptionsFromMVData(index, property, element, itemId) {
    const curRep = self._viewer.repGet(index)

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Function _countMeshTriangles has a Cognitive Complexity of 15 (exceeds 5 allowed). Consider refactoring.

Open

function _countMeshTriangles(mesh) {
  const geom = mesh.geometry
  if (geom instanceof InstancedBufferGeometry) {
    const attribs = geom.attributes
    for (const property in attribs) {

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Function getBoundingBox has a Cognitive Complexity of 15 (exceeds 5 allowed). Consider refactoring.

Open

  getBoundingBox(atoms, vBoxMin, vBoxMax) {
    const bigNum = 10000000.0

    vBoxMin.x = vBoxMin.y = vBoxMin.z = bigNum
    vBoxMax.x = vBoxMax.y = vBoxMax.z = 0 - bigNum

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