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epam/miew

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Showing 711 of 1,553 total issues

Function getAtomByFullname has 34 lines of code (exceeds 25 allowed). Consider refactoring.
Open

  getAtomByFullname(fullName) {
    const parts = fullName.split('.')
    if (parts.length !== 3) {
      return null
    }
Severity: Minor
Found in packages/miew/src/chem/Complex.js - About 1 hr to fix

    Function setOptions has 34 lines of code (exceeds 25 allowed). Consider refactoring.
    Open

      setOptions(opts) {
    if (typeof opts === 'string') {
      opts = Miew.options.fromAttr(opts)
    }
    if (opts.reps) {
    Severity: Minor
    Found in packages/miew/src/Miew.ts - About 1 hr to fix

      Function _renderShadowMap has 34 lines of code (exceeds 25 allowed). Consider refactoring.
      Open

        _renderShadowMap() {
    if (!settings.now.shadow.on) {
      return
    }
      Severity: Minor
      Found in packages/miew/src/Miew.ts - About 1 hr to fix

        Consider simplifying this complex logical expression.
        Open

            if (
      t &&
      (!(t.position.x === 0 && t.position.y === 0 && t.position.z === 0) ||
        !(
          t.quaternion.x === 0 &&
        Severity: Critical
        Found in packages/miew/src/ComplexVisualEdit.js - About 1 hr to fix

          Function propagateProp has 33 lines of code (exceeds 25 allowed). Consider refactoring.
          Open

              value: function propagateProp(path, arg) {
      if (path !== undefined) {
        var argExc = {};
        var adapter = options.adapters[_typeof(lodash.get(settings.defaults, path))];
        if (adapter === undefined) {
          Severity: Minor
          Found in packages/miew-cli/dist/index.js - About 1 hr to fix

            Function fillToolbar has 33 lines of code (exceeds 25 allowed). Consider refactoring.
            Open

              function fillToolbar(type, name, option, entityList) {
    const toolbar = $(`${self._menuId} [data-toolbar-type=${type}]`).get(0)
    const list = entityList.all
    for (let i = 0, n = list.length; i < n; i++) {
      let entry = list[i]
            Severity: Minor
            Found in demo/src/scripts/ui/Menu.js - About 1 hr to fix

              Function propagateProp has 33 lines of code (exceeds 25 allowed). Consider refactoring.
              Open

                  value: function propagateProp(path, arg) {
      if (path !== undefined) {
        var argExc = {};
        var adapter = options.adapters[_typeof(get(settings.defaults, path))];
        if (adapter === undefined) {
              Severity: Minor
              Found in packages/miew-cli/dist/index.modern.js - About 1 hr to fix

                Function onError has 33 lines of code (exceeds 25 allowed). Consider refactoring.
                Open

                function onError(err) {
  const doc = document.createDocumentFragment()

  const containers = document.getElementsByClassName('miew-container')
  const parent = containers.length > 0 ? containers[0] : null
                Severity: Minor
                Found in demo/src/scripts/index.js - About 1 hr to fix

                  Function setItem has 33 lines of code (exceeds 25 allowed). Consider refactoring.
                  Open

                    setItem(itemIdx, botPos, topPos, itemRad) {
    const chunkSize = this._chunkSize
    const firstOffset = chunkSize * 2 * itemIdx * VEC_SIZE
    const secondOffset = firstOffset + chunkSize * VEC_SIZE
                  Severity: Minor
                  Found in packages/miew/src/gfx/geometries/Simple2CCylindersGeometry.js - About 1 hr to fix

                    Function withinRadii has 33 lines of code (exceeds 25 allowed). Consider refactoring.
                    Open

                      this.withinRadii = function (x, y, z, rExtra, out) {
    let outIdx = 0

    const nearI = hashFunc(x, minX)
    const nearJ = hashFunc(y, minY)
                    Severity: Minor
                    Found in packages/miew/src/gfx/geometries/ContactSurface.js - About 1 hr to fix

                      Function createShadowmapMaterial has 33 lines of code (exceeds 25 allowed). Consider refactoring.
                      Open

                      const createShadowmapMaterial = (function () {
  const matValues = {
    colorFromDepth: true,
    orthoCam: true,
    lights: false,
                      Severity: Minor
                      Found in packages/miew/src/gfx/meshutils.js - About 1 hr to fix

                        Function change has 33 lines of code (exceeds 25 allowed). Consider refactoring.
                        Open

                          change(repSettings, complex, mode, color) {
    const diff = {}

    // modify selector
    if (repSettings.selector) {
                        Severity: Minor
                        Found in packages/miew/src/gfx/Representation.js - About 1 hr to fix

                          Function constructor has 33 lines of code (exceeds 25 allowed). Consider refactoring.
                          Open

                            constructor(source, options) {
    super(source, options)
    this._tags = [
      'HEADER',
      'TITLE',
                          Severity: Minor
                          Found in packages/miew/src/io/exporters/PDBExporter.js - About 1 hr to fix

                            Function _collectGeoInfo has 33 lines of code (exceeds 25 allowed). Consider refactoring.
                            Open

                              _collectGeoInfo(mesh) {
    const {
      geometry: {
        attributes: { position, color, normal },
        index
                            Severity: Minor
                            Found in packages/miew/src/io/exporters/fbx/FBXInfoExtractor.js - About 1 hr to fix

                              Function _fillHeader has 33 lines of code (exceeds 25 allowed). Consider refactoring.
                              Open

                                _fillHeader(headerFormat, arrays) {
    for (const key in headerFormat) {
      if (Object.hasOwn(headerFormat, key)) {
        switch (headerFormat[key][0]) {
          case valueType.singular:
                              Severity: Minor
                              Found in packages/miew/src/io/parsers/VolumeModel.js - About 1 hr to fix

                                Function RenderSettingsPanel has 32 lines of code (exceeds 25 allowed). Consider refactoring.
                                Open

                                const RenderSettingsPanel = () => {
  const options = [
    {
      name: 'Resolution'
    },
                                Severity: Minor
                                Found in packages/miew-app/src/components/menu/panelslist/panels/RenderSettingsPanel.jsx - About 1 hr to fix

                                  Function vertexFusion has 32 lines of code (exceeds 25 allowed). Consider refactoring.
                                  Open

                                    vertexFusion(offset, len) {
    const faceVer = this._indices.length
    const vertices = this._position
    const normals = this._normals
    const oldVerCount = vertices.length | 0
                                  Severity: Minor
                                  Found in packages/miew/src/gfx/geometries/IsoSurface.js - About 1 hr to fix

                                    Function constructor has 32 lines of code (exceeds 25 allowed). Consider refactoring.
                                    Open

                                      constructor(
    ResidueGroup,
    geoParams,
    complex,
    colorer,
                                    Severity: Minor
                                    Found in packages/miew/src/gfx/modes/processors/ResiduesProcessor.js - About 1 hr to fix

                                      Function _polygonize has 32 lines of code (exceeds 25 allowed). Consider refactoring.
                                      Open

                                        _polygonize(grid, isoLevel, triangles) {
    const { cubeIndex } = grid
    let i = 0
    const arrSize = IsoSurface._arrSize
    const firstIndices = IsoSurface._firstIndices
                                      Severity: Minor
                                      Found in packages/miew/src/gfx/geometries/IsoSurface.js - About 1 hr to fix

                                        Function W has 32 lines of code (exceeds 25 allowed). Consider refactoring.
                                        Open

                                          function W(r, t, n, e) {
    switch (r) {
      case 1:
        return h(t)
      case 2:
                                        Severity: Minor
                                        Found in packages/miew/src/vendors/mmtf.js - About 1 hr to fix
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