Function intersectVisibleObject has 26 lines of code (exceeds 25 allowed). Consider refactoring.

Open

Raycaster.prototype.intersectVisibleObject = function (
  gfxObj,
  camera,
  clipPlane,
  fogFarPlane

Function enable has 26 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  enable(gfx) {
    if (!gfx) {
      logger.warn("WebVR couldn't be enabled, because gfx is not defined")
      return
    }

Function _Remark350 has 26 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  _Remark350(result) {
    if (!this._source.units) {
      return
    }
    const { units } = this._source

Function _extractATOM has 26 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  _extractATOM(result) {
    if (!this._source._atoms) {
      return
    }
    const atoms = this._source._atoms

Function _extractSGroup has 26 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  _extractSGroup(molecule, moleculeArr) {
    if (!Array.isArray(moleculeArr)) {
      moleculeArr = []
    }

Function parseSync has 26 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  parseSync() {
    /* Create "Complex" variable */
    const result = (this._complex = new Complex())
    /* Parse input file line-by-line */
    const reader = new GROReader(this._data)

Function _setBoxParams has 26 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  _setBoxParams(xaxis, yaxis, zaxis) {
    // if axes are not orthogonal, the origins might not match with box coordinates - need to make shift
    let shiftX = 0
    let shiftY = 0
    const [alpha, beta, gamma] = this._header.angles

Function _rebuildObjects has 26 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  _rebuildObjects() {
    const self = this
    const gfx = this._gfx
    let i
    let n

Function _export has 26 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  _export(format) {
    const TheExporter = head(io.exporters.find({ format }))
    if (!TheExporter) {
      this.logger.error('Could not find suitable exporter for this source')
      return Promise.reject(

Function onError has a Cognitive Complexity of 9 (exceeds 5 allowed). Consider refactoring.

Open

function onError(err) {
  const doc = document.createDocumentFragment()

  const containers = document.getElementsByClassName('miew-container')
  const parent = containers.length > 0 ? containers[0] : null

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Function _initSelectionPanel has a Cognitive Complexity of 9 (exceeds 5 allowed). Consider refactoring.

Open

Menu.prototype._initSelectionPanel = function () {
  const self = this
  const selectionPanel = $(
    `${self._menuId} [data-panel-type=miew-menu-panel-selection]`
  )

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Function _calcChunksList has a Cognitive Complexity of 9 (exceeds 5 allowed). Consider refactoring.

Open

  _calcChunksList(mask, innerOnly) {
    const chunksList = []
    const { bonds } = this._selection
    const chunksToIdx = this._chunksIdc
    for (let i = 0, n = chunksToIdx.length; i < n; ++i) {

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Function updateToFrame has a Cognitive Complexity of 9 (exceeds 5 allowed). Consider refactoring.

Open

  updateToFrame(frameData) {
    // This method looks like a copy paste. However, it
    // was decided to postpone animation refactoring until GFX is fixed.
    const opts = this._mode.getLabelOpts()
    const atomsIdc = this._selection.chunks

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Function buildNormals has a Cognitive Complexity of 9 (exceeds 5 allowed). Consider refactoring.

Open

  buildNormals(numVertices, vertices, normals) {
    const self = this
    let numCloseAtoms = 0
    let vx = 0
    let vy = 0

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Function addPair has a Cognitive Complexity of 9 (exceeds 5 allowed). Consider refactoring.

Open

  addPair(indexA, indexB) {
    const ia = indexA < indexB ? indexA : indexB
    const ib = indexA > indexB ? indexA : indexB
    const codeToAdd = ia + (ib << cMaxNeighbours)

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Function _tryBond has a Cognitive Complexity of 9 (exceeds 5 allowed). Consider refactoring.

Open

  _tryBond(prevBond, currRight, currDir) {
    const bondsOrder = []
    const bondsData = this._bondsData
    const currLeft = _anotherAtom(prevBond, currRight)
    const currVec = currRight.position.clone().sub(currLeft.position)

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Function _parseSTRUCTURE has a Cognitive Complexity of 9 (exceeds 5 allowed). Consider refactoring.

Open

  _parseSTRUCTURE(stream, pars, adder) {
    const startId = 0
    const startIndex = 1
    const endId = 2
    const endIndex = 3

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Function _extractATOM has a Cognitive Complexity of 9 (exceeds 5 allowed). Consider refactoring.

Open

  _extractATOM(result) {
    if (!this._source._atoms) {
      return
    }
    const atoms = this._source._atoms

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Function _rebuidBondIndexes has a Cognitive Complexity of 9 (exceeds 5 allowed). Consider refactoring.

Open

  _rebuidBondIndexes(atoms, bonds) {
    const count = atoms.length
    for (let i = 0; i < count; i++) {
      const atomId = atoms[i].id

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Function resolveSourceShortcut has a Cognitive Complexity of 9 (exceeds 5 allowed). Consider refactoring.

Open

function resolveSourceShortcut(source, opts) {
  if (!isString(source)) {
    return source
  }

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