Function _extractAssemblies has a Cognitive Complexity of 9 (exceeds 5 allowed). Consider refactoring.

Open

  _extractAssemblies(complex, complexData) {
    const { asymDict } = this
    const asmGen = complexData.pdbx_struct_assembly_gen
    if (!asmGen) {
      return

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Function performAction has 7 arguments (exceeds 4 allowed). Consider refactoring.

Open

    performAction: function anonymous(yytext, yyleng, yylineno, yy, yystate
    , $$
    , _$

Function performAction has 7 arguments (exceeds 4 allowed). Consider refactoring.

Open

    performAction: function anonymous(yytext, yyleng, yylineno, yy, yystate
    , $$
    , _$

Function performAction has 7 arguments (exceeds 4 allowed). Consider refactoring.

Open

      yytext,
      yyleng,
      yylineno,
      yy,
      yystate /* action[1] */,

Function performAction has 7 arguments (exceeds 4 allowed). Consider refactoring.

Open

      yytext,
      yyleng,
      yylineno,
      yy,
      yystate /* action[1] */,

Function compareOptionsWithDefaults has a Cognitive Complexity of 8 (exceeds 5 allowed). Consider refactoring.

Open

function compareOptionsWithDefaults(opts, defOpts) {
  var optsStr = [];
  if (defOpts && opts) {
    var keys = Object.keys(opts);
    for (var p = 0; p < keys.length; ++p) {

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Function compareOptionsWithDefaults has a Cognitive Complexity of 8 (exceeds 5 allowed). Consider refactoring.

Open

function compareOptionsWithDefaults(opts, defOpts) {
  const optsStr = []
  if (defOpts && opts) {
    const keys = Object.keys(opts)
    for (let p = 0; p < keys.length; ++p) {

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Function remove has a Cognitive Complexity of 8 (exceeds 5 allowed). Consider refactoring.

Open

  remove(index) {
    if (index && Object.hasOwn(this.representationID, index)) {
      delete this.representationMap[this.representationID[index]]
      delete this.representationID[index]
    }

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Function _updateInfo has a Cognitive Complexity of 8 (exceeds 5 allowed). Consider refactoring.

Open

Menu.prototype._updateInfo = function (dataSource) {
  if (dataSource && dataSource.id !== 'Complex') {
    return
  }
  const complex = dataSource

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Function isNativeReflectConstruct has a Cognitive Complexity of 8 (exceeds 5 allowed). Consider refactoring.

Open

var isNativeReflectConstruct = createCommonjsModule(function (module) {
function _isNativeReflectConstruct() {
  if (typeof Reflect === "undefined" || !Reflect.construct) return false;
  if (Reflect.construct.sham) return false;
  if (typeof Proxy === "function") return true;

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Function compareOptionsWithDefaults has a Cognitive Complexity of 8 (exceeds 5 allowed). Consider refactoring.

Open

function compareOptionsWithDefaults(opts, defOpts) {
  var optsStr = [];
  if (defOpts && opts) {
    var keys = Object.keys(opts);
    for (var p = 0; p < keys.length; ++p) {

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Function _fixKeyboard has a Cognitive Complexity of 8 (exceeds 5 allowed). Consider refactoring.

Open

Menu.prototype._fixKeyboard = function () {
  // do IFRAME related hack
  if (window !== window.top) {
    const parentDocument = window.top.document
    let button = parentDocument.querySelector('button')

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Function isNativeReflectConstruct has a Cognitive Complexity of 8 (exceeds 5 allowed). Consider refactoring.

Open

var isNativeReflectConstruct = createCommonjsModule(function (module) {
function _isNativeReflectConstruct() {
  if (typeof Reflect === "undefined" || !Reflect.construct) return false;
  if (Reflect.construct.sham) return false;
  if (typeof Proxy === "function") return true;

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Function setFrame has a Cognitive Complexity of 8 (exceeds 5 allowed). Consider refactoring.

Open

  setFrame(frameIdx) {
    this.frameIsReady = false
    if (
      frameIdx >= this._framesRange.start &&
      frameIdx <= this._framesRange.end

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Function _prepareCylinderInfo has a Cognitive Complexity of 8 (exceeds 5 allowed). Consider refactoring.

Open

function _prepareCylinderInfo(chunkIndices) {
  chunkIndices.sort(sortNumber)
  const chunksIdx = []
  const cylinderInfo = []
  for (let i = 0, n = chunkIndices.length; i < n; ++i) {

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Function getAtomColor has a Cognitive Complexity of 8 (exceeds 5 allowed). Consider refactoring.

Open

  getAtomColor(atom, _complex) {
    const { opts } = this
    let factor = 1
    if (atom.temperature && opts) {
      if (opts.min === opts.max) {

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Avoid deeply nested control flow statements.

Open

            if (cube.pointsValuesLinear[cubeValuesIndex + i] < 0.0) {
              bitsInside |= 1 << i
            }

Avoid deeply nested control flow statements.

Open

            if (val < corners[ind]) {
              corners[ind] = val
            }

Function _build has a Cognitive Complexity of 8 (exceeds 5 allowed). Consider refactoring.

Open

  _build() {
    const bondsIdc = this._selection.chunks
    const { bonds, parent } = this._selection
    const mode = this._mode
    const colorer = this._colorer

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Avoid deeply nested control flow statements.

Open

            if (dist2 < probeSpRad2) {
              distToSphere = Math.sqrt(dist2)
              distToBorder = -(distToSphere - probeSphereRadius)
              innerBlockWorkAround()
            } // if (dist from corner point to sphere center more 2 radiuses)