Function setValues has a Cognitive Complexity of 28 (exceeds 5 allowed). Consider refactoring.

Open

  setValues(values) {
    if (typeof values === 'undefined') {
      return
    }

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Function mousedown has a Cognitive Complexity of 28 (exceeds 5 allowed). Consider refactoring.

Open

ObjectControls.prototype.mousedown = function (event) {
  if (this.enabled === false || this._state !== STATE.NONE) {
    return
  }

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Function _findSuitableMolecule has a Cognitive Complexity of 28 (exceeds 5 allowed). Consider refactoring.

Open

  _findSuitableMolecule(data, molSet) {
    for (const key in data) {
      if (key === 'xmlNode') {
        continue
      } else if (key === 'molecule') {

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Function _renderScene has a Cognitive Complexity of 28 (exceeds 5 allowed). Consider refactoring.

Open

  _renderScene(camera, distortion, target) {
    distortion = distortion || false
    target = target || null

    const gfx = this._gfx

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Function _presetsPanelActionsPdbInputsRefresh has 100 lines of code (exceeds 25 allowed). Consider refactoring.

Open

Menu.prototype._presetsPanelActionsPdbInputsRefresh = function (self) {
  const loadPdbButton = $(
    `${self._menuId} .presets-panel-action[data-presets-panel-action=pdb-load]`
  )
  const clearInputsButton = $(

Function _renderScene has 100 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  _renderScene(camera, distortion, target) {
    distortion = distortion || false
    target = target || null

    const gfx = this._gfx

File FrameInfo.js has 332 lines of code (exceeds 250 allowed). Consider refactoring.

Open

import SecondaryStructureColorer from './colorers/SecondaryStructureColorer'
import { Vector3 } from 'three'

const cDataOffset = 12
const cFirstMask = 0x0fffff00

Function _initToolbar has 99 lines of code (exceeds 25 allowed). Consider refactoring.

Open

Menu.prototype._initToolbar = function () {
  const self = this

  const frag = document.createDocumentFragment()
  let newItem

Function init has 97 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  init() {
    const container = this._container
    const elem = utils.createElement('div', { class: 'miew-canvas' })
    _setContainerContents(container, elem)
    this._container = elem

File UberMaterial.js has 325 lines of code (exceeds 250 allowed). Consider refactoring.

Open

/* eslint-disable no-magic-numbers */
/* eslint-disable guard-for-in */

import vertexShader from './Uber.vert'
import fragmentShader from './Uber.frag'

File SDFParser.js has 323 lines of code (exceeds 250 allowed). Consider refactoring.

Open

import Parser from './Parser'
import chem from '../../chem'
import SDFStream from './SDFStream'
import Assembly from '../../chem/Assembly'
import { Matrix4, Vector3 } from 'three'

Function _init has a Cognitive Complexity of 26 (exceeds 5 allowed). Consider refactoring.

Open

Menu.prototype._init = function () {
  const self = this
  let selectorHide = null
  let selectorShow = null
  let newPanelId = null

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Function _initToolsPanel has 92 lines of code (exceeds 25 allowed). Consider refactoring.

Open

Menu.prototype._initToolsPanel = function () {
  const self = this
  $(
    `${self._menuId} .miew-menu-modals [data-modal-type=miew-menu-modal-url]`
  ).on('shown.bs.modal', () => {

Function _initializeTerminal has 92 lines of code (exceeds 25 allowed). Consider refactoring.

Open

Menu.prototype._initializeTerminal = function () {
  const self = this
  let res = null
  let urlSubString = ''
  const element = $(

Function _initReprPanel has 90 lines of code (exceeds 25 allowed). Consider refactoring.

Open

Menu.prototype._initReprPanel = function () {
  const self = this
  const reprList = $(
    `${self._menuId} .panel-menu[data-panel-type=miew-menu-panel-representation] .miew-repr-list`
  )

Function AVHash has 90 lines of code (exceeds 25 allowed). Consider refactoring.

Open

function AVHash(posRad, min, max, maxDistance) {
  const itemSize = 4
  const nAtoms = posRad.length / itemSize

  const minX = min[0]

Function _extractSGroups has a Cognitive Complexity of 25 (exceeds 5 allowed). Consider refactoring.

Open

  _extractSGroups(molecule, atoms) {
    const moleculeArr = this._extractSGroup(molecule)

    const count = atoms.length
    let i

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Function _onLoad has a Cognitive Complexity of 25 (exceeds 5 allowed). Consider refactoring.

Open

  _onLoad(dataSource, opts) {
    const gfx = this._gfx
    let visualName = null

    if (opts.animation) {

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File ComplexVisualEdit.js has 314 lines of code (exceeds 250 allowed). Consider refactoring.

Open

import logger from './utils/logger'
import gfxutils from './gfx/gfxutils'
import './gfx/modes'
import { Group, Matrix4, Object3D, Vector3 } from 'three'

Function updateSelectionMask has 88 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  updateSelectionMask(pickedObj) {
    const self = this
    const { atom } = pickedObj
    let { residue, chain, molecule } = pickedObj
    const setMask = 1 << this._selectionBit