packages/miew/src/gfx/colorers/HydrophobicityColorer.test.js
import { expect } from 'chai'
import sinon from 'sinon'
import palettes from '../palettes'
import HydrophobicityColorer from './HydrophobicityColorer'
describe('HydrophobicityColorer', () => {
const opts = { gradient: 'rainbow' }
const left = 0.0
const center = 0.5
const right = 1.0
const lGradientColor = 0x0000ff
const cGradientColor = 0x00ff00
const rGradientColor = 0xff0000
class FirstPalette {
defaultResidueColor = 0xffffff
getGradientColor(value, gradientName) {
if (value === left && gradientName === opts.gradient) {
return lGradientColor
}
if (value === center && gradientName === opts.gradient) {
return cGradientColor
}
if (value === right && gradientName === opts.gradient) {
return rGradientColor
}
return 0x000000
}
}
const palette = new FirstPalette()
describe('#getAtomColor', () => {
let paletteStub
let hColorer
before(() => {
paletteStub = sinon.stub(palettes, 'first').value(palette)
hColorer = new HydrophobicityColorer(opts)
})
after(() => {
paletteStub.restore()
})
it("returns default color which is set for residues if atom's residue is not hydrophobicity", () => {
const atom = { residue: { _type: {} } }
const color = hColorer.getAtomColor(atom)
expect(color).to.equal(palette.defaultResidueColor)
})
})
describe('#getResidueColor', () => {
let paletteStub
let hColorer
beforeEach(() => {
paletteStub = sinon.stub(palettes, 'first').value(palette)
hColorer = new HydrophobicityColorer(opts)
})
afterEach(() => {
paletteStub.restore()
})
it('returns left color of gradient for residue with the highest hydrophobicity', () => {
const residueH = { _type: { hydrophobicity: -4.5 } }
const color = hColorer.getResidueColor(residueH)
expect(color).to.equal(lGradientColor)
})
it('returns middle color of gradient for residue with the middle hydrophobicity', () => {
const residueH = { _type: { hydrophobicity: 0.0 } }
const color = hColorer.getResidueColor(residueH)
expect(color).to.equal(cGradientColor)
})
it('returns right color of gradient for residue with the highest hydrophobicity', () => {
const residueH = { _type: { hydrophobicity: 4.5 } }
const color = hColorer.getResidueColor(residueH)
expect(color).to.equal(rGradientColor)
})
it('returns default color which is set for residues if residue is not hydrophobicity', () => {
const residue = { _type: {} }
const color = hColorer.getResidueColor(residue)
expect(color).to.equal(palette.defaultResidueColor)
})
})
describe('.id', () => {
const hColorer = new HydrophobicityColorer()
it("have .id property type 'string'", () => {
expect(hColorer).to.have.property('id')
expect(hColorer.id).to.be.a('string')
})
it('have .id property different from such in parent class', () => {
const colorer = Object.getPrototypeOf(Object.getPrototypeOf(hColorer))
expect(hColorer.id).to.not.equal(colorer.id)
})
})
describe('.name', () => {
it("have .name property type 'string'", () => {
const hColorer = new HydrophobicityColorer()
expect(hColorer).to.have.property('name')
expect(hColorer.name).to.be.a('string')
})
})
describe('.shortName', () => {
it("have .shortName property type 'string'", () => {
const hColorer = new HydrophobicityColorer()
expect(hColorer).to.have.property('shortName')
expect(hColorer.shortName).to.be.a('string')
})
})
})