Function ContactSurface has a Cognitive Complexity of 122 (exceeds 5 allowed). Consider refactoring.

Open

function ContactSurface(packedArrays, boundaries, params, _indexList) {
  // Field generation method adapted from AstexViewer (Mike Hartshorn)
  // by Fred Ludlow.
  // Other parts based heavily on NGL (Alexander Rose) EDT Surface class
  //

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Function ContactSurface has 324 lines of code (exceeds 25 allowed). Consider refactoring.

Open

function ContactSurface(packedArrays, boundaries, params, _indexList) {
  // Field generation method adapted from AstexViewer (Mike Hartshorn)
  // by Fred Ludlow.
  // Other parts based heavily on NGL (Alexander Rose) EDT Surface class
  //

File ContactSurface.js has 421 lines of code (exceeds 250 allowed). Consider refactoring.

Open

import utils from '../../utils'
import { Vector3 } from 'three'

/**
 * Modifed from SpatialHash

Function AVHash has a Cognitive Complexity of 32 (exceeds 5 allowed). Consider refactoring.

Open

function AVHash(posRad, min, max, maxDistance) {
  const itemSize = 4
  const nAtoms = posRad.length / itemSize

  const minX = min[0]

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Function AVHash has 90 lines of code (exceeds 25 allowed). Consider refactoring.

Open

function AVHash(posRad, min, max, maxDistance) {
  const itemSize = 4
  const nAtoms = posRad.length / itemSize

  const minX = min[0]

Function projectPoints has 69 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  function projectPoints() {
    // For each atom:
    //     Iterate over a subsection of the grid, for each point:
    //         If current value < 0.0, unvisited, set positive
    //

Function projectTorus has 64 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  function projectTorus(a, b) {
    const aIdx = itemSize * a
    const bIdx = itemSize * b
    const xa = posRad[aIdx]
    const ya = posRad[aIdx + 1]

Function withinRadii has 33 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  this.withinRadii = function (x, y, z, rExtra, out) {
    let outIdx = 0

    const nearI = hashFunc(x, minX)
    const nearJ = hashFunc(y, minY)

Avoid deeply nested control flow statements.

Open

            if (d2 < ar2) {
              const w = Math.exp(-d2 * sigma2Inv)
              const cIdx = idx * 3
              volTex[cIdx] += cr * w
              volTex[cIdx + 1] += cg * w

Avoid deeply nested control flow statements.

Open

            if (dx * dx + dy * dy + dz * dz <= rSum * rSum) {
              out[outIdx++] = data[dataIndex]
            }

Avoid deeply nested control flow statements.

Open

            for (let ix = minx; ix < maxx; ix++) {
              dx = px - gridx[ix]
              d2 = dzy2 + dx * dx
              const idx = ix + zyOffset
              const current = grid[idx]

Function obscured has 5 arguments (exceeds 4 allowed). Consider refactoring.

Open

  function obscured(innX, innY, innZ, a, b) {

Function withinRadii has 5 arguments (exceeds 4 allowed). Consider refactoring.

Open

  this.withinRadii = function (x, y, z, rExtra, out) {