src/interaction/SoftCosine.py
# Copyright (C) 2012,2013
# Max Planck Institute for Polymer Research
# Copyright (C) 2008,2009,2010,2011
# Max-Planck-Institute for Polymer Research & Fraunhofer SCAI
#
# This file is part of ESPResSo++.
#
# ESPResSo++ is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# ESPResSo++ is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with this program. If not, see <http://www.gnu.org/licenses/>.
r"""
*********************************
espressopp.interaction.SoftCosine
*********************************
This class provides methods to compute forces and energies ofthe SoftCosine potential.
.. math::
V(r) = A \left[ 1.0 + cos \left( \frac{\pi r}{r_c} \right) \right]
.. function:: espressopp.interaction.SoftCosine(A, cutoff, shift)
:param A: (default: 1.0)
:param cutoff: (default: infinity)
:param shift: (default: "auto")
:type A: real
:type cutoff:
:type shift:
.. function:: espressopp.interaction.VerletListSoftCosine(stor)
:param stor:
:type stor:
.. function:: espressopp.interaction.VerletListSoftCosine.setPotential(type1, type2, potential)
:param type1:
:param type2:
:param potential:
:type type1:
:type type2:
:type potential:
.. function:: espressopp.interaction.CellListSoftCosine(stor)
:param stor:
:type stor:
.. function:: espressopp.interaction.CellListSoftCosine.setPotential(type1, type2, potential)
:param type1:
:param type2:
:param potential:
:type type1:
:type type2:
:type potential:
.. function:: espressopp.interaction.FixedPairListSoftCosine(system, vl, potential)
:param system:
:param vl:
:param potential:
:type system:
:type vl:
:type potential:
.. function:: espressopp.interaction.FixedPairListSoftCosine.setPotential(potential)
:param potential:
:type potential:
"""
from espressopp import pmi, infinity
from espressopp.esutil import *
from espressopp.interaction.Potential import *
from espressopp.interaction.Interaction import *
from _espressopp import interaction_SoftCosine, \
interaction_VerletListSoftCosine, \
interaction_CellListSoftCosine, \
interaction_FixedPairListSoftCosine
class SoftCosineLocal(PotentialLocal, interaction_SoftCosine):
def __init__(self, A=1.0, cutoff=infinity, shift="auto"):
if not (pmi._PMIComm and pmi._PMIComm.isActive()) or pmi._MPIcomm.rank in pmi._PMIComm.getMPIcpugroup():
if shift =="auto":
cxxinit(self, interaction_SoftCosine, A, cutoff)
else:
cxxinit(self, interaction_SoftCosine, A, cutoff, shift)
class VerletListSoftCosineLocal(InteractionLocal, interaction_VerletListSoftCosine):
'The (local) SoftCosine interaction using Verlet lists.'
def __init__(self, vl):
if not (pmi._PMIComm and pmi._PMIComm.isActive()) or pmi._MPIcomm.rank in pmi._PMIComm.getMPIcpugroup():
cxxinit(self, interaction_VerletListSoftCosine, vl)
def setPotential(self, type1, type2, potential):
if not (pmi._PMIComm and pmi._PMIComm.isActive()) or pmi._MPIcomm.rank in pmi._PMIComm.getMPIcpugroup():
self.cxxclass.setPotential(self, type1, type2, potential)
def getPotential(self, type1, type2):
if not (pmi._PMIComm and pmi._PMIComm.isActive()) or pmi._MPIcomm.rank in pmi._PMIComm.getMPIcpugroup():
return self.cxxclass.getPotential(self, type1, type2)
class VerletListSoftCosineLocal(InteractionLocal, interaction_VerletListSoftCosine):
def __init__(self, stor):
if not (pmi._PMIComm and pmi._PMIComm.isActive()) or pmi._MPIcomm.rank in pmi._PMIComm.getMPIcpugroup():
cxxinit(self, interaction_VerletListSoftCosine, stor)
def setPotential(self, type1, type2, potential):
if not (pmi._PMIComm and pmi._PMIComm.isActive()) or pmi._MPIcomm.rank in pmi._PMIComm.getMPIcpugroup():
self.cxxclass.setPotential(self, type1, type2, potential)
class CellListSoftCosineLocal(InteractionLocal, interaction_CellListSoftCosine):
def __init__(self, stor):
if not (pmi._PMIComm and pmi._PMIComm.isActive()) or pmi._MPIcomm.rank in pmi._PMIComm.getMPIcpugroup():
cxxinit(self, interaction_CellListSoftCosine, stor)
def setPotential(self, type1, type2, potential):
if not (pmi._PMIComm and pmi._PMIComm.isActive()) or pmi._MPIcomm.rank in pmi._PMIComm.getMPIcpugroup():
self.cxxclass.setPotential(self, type1, type2, potential)
class FixedPairListSoftCosineLocal(InteractionLocal, interaction_FixedPairListSoftCosine):
def __init__(self, system, vl, potential):
if not (pmi._PMIComm and pmi._PMIComm.isActive()) or pmi._MPIcomm.rank in pmi._PMIComm.getMPIcpugroup():
cxxinit(self, interaction_FixedPairListSoftCosine, system, vl, potential)
def setPotential(self, potential):
if not (pmi._PMIComm and pmi._PMIComm.isActive()) or pmi._MPIcomm.rank in pmi._PMIComm.getMPIcpugroup():
self.cxxclass.setPotential(self, potential)
if pmi.isController:
class SoftCosine(Potential):
'The SoftCosine potential.'
pmiproxydefs = dict(
cls = 'espressopp.interaction.SoftCosineLocal',
pmiproperty = ['A']
)
class VerletListSoftCosine(Interaction, metaclass=pmi.Proxy):
pmiproxydefs = dict(
cls = 'espressopp.interaction.VerletListSoftCosineLocal',
pmicall = ['setPotential','getPotential']
)
class CellListSoftCosine(Interaction, metaclass=pmi.Proxy):
pmiproxydefs = dict(
cls = 'espressopp.interaction.CellListSoftCosineLocal',
pmicall = ['setPotential']
)
class FixedPairListSoftCosine(Interaction, metaclass=pmi.Proxy):
pmiproxydefs = dict(
cls = 'espressopp.interaction.FixedPairListSoftCosineLocal',
pmicall = ['setPotential']
)