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Showing 106 of 106 total issues

Function create_dummy_dataset has 6 arguments (exceeds 4 allowed). Consider refactoring.
Open

def create_dummy_dataset(
Severity: Minor
Found in src/torchio/utils.py - About 45 mins to fix

    Function __init__ has a Cognitive Complexity of 8 (exceeds 5 allowed). Consider refactoring.
    Open

        def __init__(
        self,
        target_shape: Union[int, TypeTripletInt, None] = None,
        padding_mode: Union[str, float] = 0,
        mask_name: Optional[str] = None,
    Severity: Minor
    Found in src/torchio/transforms/preprocessing/spatial/crop_or_pad.py - About 45 mins to fix

    Cognitive Complexity

    Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

    A method's cognitive complexity is based on a few simple rules:

    • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
    • Code is considered more complex for each "break in the linear flow of the code"
    • Code is considered more complex when "flow breaking structures are nested"

    Further reading

    Function _get_subjects has a Cognitive Complexity of 8 (exceeds 5 allowed). Consider refactoring.
    Open

        def _get_subjects(
        self,
        add_segmentations: bool,
        add_bounding_boxes: bool,
    ) -> List[Subject]:
    Severity: Minor
    Found in src/torchio/datasets/rsna_spine_fracture.py - About 45 mins to fix

    Cognitive Complexity

    Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

    A method's cognitive complexity is based on a few simple rules:

    • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
    • Code is considered more complex for each "break in the linear flow of the code"
    • Code is considered more complex when "flow breaking structures are nested"

    Further reading

    Function __init__ has 5 arguments (exceeds 4 allowed). Consider refactoring.
    Open

        def __init__(
    Severity: Minor
    Found in src/torchio/datasets/rsna_miccai.py - About 35 mins to fix

      Function __init__ has 5 arguments (exceeds 4 allowed). Consider refactoring.
      Open

          def __init__(
      Severity: Minor
      Found in src/torchio/transforms/preprocessing/spatial/crop_or_pad.py - About 35 mins to fix

        Function add_artifact has 5 arguments (exceeds 4 allowed). Consider refactoring.
        Open

            def add_artifact(
        Severity: Minor
        Found in src/torchio/transforms/augmentation/intensity/random_ghosting.py - About 35 mins to fix

          Function _normalize has 5 arguments (exceeds 4 allowed). Consider refactoring.
          Open

          def _normalize(
          Severity: Minor
          Found in src/torchio/transforms/preprocessing/intensity/histogram_standardization.py - About 35 mins to fix

            Function __init__ has 5 arguments (exceeds 4 allowed). Consider refactoring.
            Open

                def __init__(
            Severity: Minor
            Found in src/torchio/transforms/augmentation/intensity/random_ghosting.py - About 35 mins to fix

              Function __init__ has 5 arguments (exceeds 4 allowed). Consider refactoring.
              Open

                  def __init__(
              Severity: Minor
              Found in src/torchio/transforms/augmentation/spatial/random_anisotropy.py - About 35 mins to fix

                Function parse_params has 5 arguments (exceeds 4 allowed). Consider refactoring.
                Open

                    def parse_params(self, params, around, name, make_ranges=True, **kwargs):
                Severity: Minor
                Found in src/torchio/transforms/transform.py - About 35 mins to fix

                  Function _set_resampler_reference has 5 arguments (exceeds 4 allowed). Consider refactoring.
                  Open

                      def _set_resampler_reference(
                  Severity: Minor
                  Found in src/torchio/transforms/preprocessing/spatial/resample.py - About 35 mins to fix

                    Function __init__ has 5 arguments (exceeds 4 allowed). Consider refactoring.
                    Open

                        def __init__(
                    Severity: Minor
                    Found in src/torchio/datasets/ixi.py - About 35 mins to fix

                      Function check_consistent_attribute has 5 arguments (exceeds 4 allowed). Consider refactoring.
                      Open

                          def check_consistent_attribute(
                      Severity: Minor
                      Found in src/torchio/data/subject.py - About 35 mins to fix

                        Function _parse_range has 5 arguments (exceeds 4 allowed). Consider refactoring.
                        Open

                            def _parse_range(
                        Severity: Minor
                        Found in src/torchio/transforms/transform.py - About 35 mins to fix

                          Function __init__ has 5 arguments (exceeds 4 allowed). Consider refactoring.
                          Open

                              def __init__(
                          Severity: Minor
                          Found in src/torchio/transforms/preprocessing/intensity/rescale.py - About 35 mins to fix

                            Function __init__ has 5 arguments (exceeds 4 allowed). Consider refactoring.
                            Open

                                def __init__(
                            Severity: Minor
                            Found in src/torchio/transforms/augmentation/spatial/random_elastic_deformation.py - About 35 mins to fix

                              Function extract_patch has 5 arguments (exceeds 4 allowed). Consider refactoring.
                              Open

                                  def extract_patch(  # type: ignore[override]
                              Severity: Minor
                              Found in src/torchio/data/sampler/weighted.py - About 35 mins to fix

                                Function _write_sitk has 5 arguments (exceeds 4 allowed). Consider refactoring.
                                Open

                                def _write_sitk(
                                Severity: Minor
                                Found in src/torchio/data/io.py - About 35 mins to fix

                                  Function __init__ has 5 arguments (exceeds 4 allowed). Consider refactoring.
                                  Open

                                      def __init__(
                                  Severity: Minor
                                  Found in src/torchio/transforms/augmentation/intensity/random_ghosting.py - About 35 mins to fix

                                    Function __init__ has 5 arguments (exceeds 4 allowed). Consider refactoring.
                                    Open

                                        def __init__(
                                    Severity: Minor
                                    Found in src/torchio/datasets/ixi.py - About 35 mins to fix
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