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fepegar/torchio

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Showing 108 of 108 total issues

Function __getitem__ has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

    def __getitem__(self, item):
        if isinstance(item, (slice, int, tuple)):
            try:
                self.check_consistent_spatial_shape()
            except RuntimeError as e:
Severity: Minor
Found in src/torchio/data/subject.py - About 25 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function nib_to_sitk has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

def nib_to_sitk(
    data: TypeData,
    affine: TypeData,
    force_3d: bool = False,
    force_4d: bool = False,
Severity: Minor
Found in src/torchio/data/io.py - About 25 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function inverse has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

    def inverse(self, warn: bool = True) -> Compose:
        """Return a composed transform with inverted order and transforms.

        Args:
            warn: Issue a warning if some transforms are not invertible.
Severity: Minor
Found in src/torchio/transforms/augmentation/composition.py - About 25 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function get_params_dict_from_kwargs has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

def get_params_dict_from_kwargs(kwargs):
    from torchio.utils import guess_type

    params_dict = {}
    if kwargs is not None:
Severity: Minor
Found in src/torchio/cli/apply_transform.py - About 25 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function add_artifact has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

    def add_artifact(
        self,
        tensor: torch.Tensor,
        spikes_positions: np.ndarray,
        intensity_factor: float,
Severity: Minor
Found in src/torchio/transforms/augmentation/intensity/random_spike.py - About 25 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function color_labels has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

def color_labels(arrays, cmap_dict):
    results = []
    for array in arrays:
        si, sj = array.shape
        rgb = np.zeros((si, sj, 3), dtype=np.uint8)
Severity: Minor
Found in src/torchio/visualization.py - About 25 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function get_params has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

    def get_params(
        self,
        order: int,
        coefficients_range: Tuple[float, float],
    ) -> List[float]:
Severity: Minor
Found in src/torchio/transforms/augmentation/intensity/random_bias_field.py - About 25 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function get_applied_transforms has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

    def get_applied_transforms(
        self,
        ignore_intensity: bool = False,
        image_interpolation: Optional[str] = None,
    ) -> List[Transform]:
Severity: Minor
Found in src/torchio/data/subject.py - About 25 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

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