lib/genome/importers/idg/idg_tsv_importer.rb
module Genome
module Importers
module IDG
def self.source_info
{
base_url: 'https://druggablegenome.net/IDGProteinList/',
site_url: 'https://druggablegenome.net/',
citation: 'Rodgers,G., Austin,C., Anderson,J., Pawlyk,A., Colvis,C., Margolis,R. and Baker,J. (2018) Glimmers in illuminating the druggable genome. Nat. Rev. Drug Discov., 17, 301–302. PMID: 29348682',
source_db_version: '15-July-2019',
source_type_id: DataModel::SourceType.POTENTIALLY_DRUGGABLE,
source_trust_level_id: DataModel::SourceTrustLevel.EXPERT_CURATED,
source_db_name: 'IDG',
full_name: 'Illuminating the Druggable Genome',
license_text: 'Creative Commons Attribution-ShareAlike 4.0 International License',
license_link: 'https://druggablegenome.net/IDGPolicies#Policy3',
}
end
def self.run(tsv_path)
TSVImporter.import tsv_path, IDGRow, source_info, header=true do
gene :gene_symbol, nomenclature: 'IDG Gene Symbol' do
name :gene_symbol, nomenclature: 'Gene Symbol', transform: ->(x) { x.upcase }
attribute :gene_category, name: 'Gene Category'
end
end.save!
end
end
end
end