genome/dgi-db

require 'rubygems'
require 'nokogiri'
require 'open-uri'
module Genome
  module Updaters
    class GetEntrez
      def current_version
        DataModel::Source.where(source_db_name: 'Entrez').first['source_db_version']
      end

      def new_version
        @new_version ||= scrape_live_version
      end

      def scrape_live_version
        url = 'http://www.ebi.ac.uk/QuickGO/GHistory?period=6m&limit=10000#info=3'
        doc = Nokogiri::HTML(open(url))
        doc #Parse doc here
      end

      def is_current?
        current_version == new_version
      end

      def dgidb_go_terms
        @dgidb_go_terms ||= [{short_name: "Kinase", full_go_name: "KinaseActivity",
                           human_readable: "Kinase", go_id: "GO0016301"},
                          {short_name: "TyrosineKinase", full_go_name: "ProteinTyrosineKinaseActivity",
                           human_readable: "Tyrosine Kinase", go_id: "GO0004713"},
                          {short_name: "SerineThreonineKinase", full_go_name: "ProteinSerineThreonineKinaseActivity",
                           human_readable: "Serine Threonine Kinase", go_id: "GO0004674"},
                          {short_name: "ProteinPhosphatase", full_go_name: "PhospoproteinPhosphataseActivity",
                           human_readable: "Protein Phosphatase", go_id: "GO0004721"},
                          {short_name: "GProteinCoupledReceptor", full_go_name: "GpcrActivity",
                           human_readable: "G Protein Coupled Receptor", go_id: "GO0004930"},
                          {short_name: "NeutralZincMetallopeptidases", full_go_name: "MetallopeptidaseActivity",
                           human_readable: "Neutral Zinc Metallopeptidase", go_id: "GO0008237"},
                          {short_name: "ABCTransporter", full_go_name: "ABCTransporterActivity",
                           human_readable: "ABC Transporter", go_id: "GO0042626"},
                          {short_name: "RNADirectedDNAPolymerase", full_go_name: "RNADirectedDnaPolymeraseActivity",
                           human_readable: "RNA Directed DNA Polymerase", go_id: "GO0003964"},
                          {short_name: "Transporter", full_go_name: "TransporterActivity",
                           human_readable: "Transporter", go_id: "GO0005215"},
                          {short_name: "IonChannel", full_go_name: "IonChannelActivity",
                           human_readable: "Ion Channel", go_id: "GO0005216"},
                          {short_name: "NuclearHormoneReceptor", full_go_name: "LigandDependentNuclearReceptorActivity",
                           human_readable: "Nuclear Hormone Receptor", go_id: "GO0004879"},
                          {short_name: "LipidKinase", full_go_name: "LipidKinaseActivity",
                           human_readable: "Lipid Kinase", go_id: "GO0001727"},
                          {short_name: "Phospholipase", full_go_name: "PhospholipaseActivity",
                           human_readable: "Phospholipase", go_id: "GO0004620"},
                          {short_name: "ProteaseInhibitorActivity", full_go_name: "PeptidaseInhibitorActivity",
                           human_readable: "Protease Inhibitor", go_id: "GO0030414"},
                          {short_name: "DNARepair", full_go_name: "DnaRepair",
                           human_readable: "DNA Repair", go_id: "GO0006281"},
                          {short_name: "CellSurface", full_go_name: "CellSurface",
                           human_readable: "Cell Surface", go_id: "GO0009986"},
                          {short_name: "ExternalSideOfPlasmaMembrane", full_go_name: "ExternalSideOfPlasmaMembrane",
                           human_readable: "External Side Of Plasma Membrane", go_id: "GO0009897"},
                          {short_name: "GrowthFactor", full_go_name: "GrowthFactorActivity",
                           human_readable: "Growth Factor", go_id: "GO0008083"},
                          {short_name: "HormoneActivity", full_go_name: "HormoneActivity",
                           human_readable: "Hormone Activity", go_id: "GO0005179"},
                          {short_name: "TumorSuppressor", full_go_name: "RegulationOfCellCycle",
                           human_readable: "Tumor Suppressor", go_id: "GO0051726"},
                          {short_name: "TranscriptionFactorBinding", full_go_name: "TranscriptionFactorBinding",
                           human_readable: "Transcription Factor Binding", go_id: "GO0008134"},
                          {short_name: "TranscriptionFactorComplex", full_go_name: "TranscriptionFactorComplex",
                           human_readable: "Transcription Factor Complex", go_id: "GO0005667"},
                          {short_name: "HistoneModification", full_go_name: "HistoneModification",
                           human_readable: "Histone Modification", go_id: "GO0016570"},
                          {short_name: "DrugMetabolism", full_go_name: "DrugMetabolism",
                           human_readable: "Drug Metabolism", go_id: "GO0017144"},
                          {short_name: "DrugResistance", full_go_name: "ResponseToDrug",
                           human_readable: "Drug Resistance", go_id: "GO0042493"},
                          {short_name: "ProteaseActivity", full_go_name: "PeptidaseActivity",
                           human_readable: "Protease", go_id: "GO0008233"}]
      end


    end
  end
end