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genome/dgi-db

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lib/genome/updaters/get_pubchem.rb

Summary

Maintainability
A
2 hrs
Test Coverage

Method process_drug has 38 lines of code (exceeds 25 allowed). Consider refactoring.
Open

      def process_drug(current_id, alternate_names)
        if alternate_names.any? { |name| existing_drugs[name.upcase.strip] }
          pubchem_primary_name = alternate_names.first.upcase.strip
          drug_claim = DataModel::DrugClaim.create(
            {
Severity: Minor
Found in lib/genome/updaters/get_pubchem.rb - About 1 hr to fix

    Method process_pubchem_file has a Cognitive Complexity of 10 (exceeds 5 allowed). Consider refactoring.
    Open

          def process_pubchem_file(pubchem_file)
        alternate_names = []
        current_id = nil
        lines_processed = 0
        Zlib::GzipReader.new(pubchem_file).each_line do |line|
    Severity: Minor
    Found in lib/genome/updaters/get_pubchem.rb - About 1 hr to fix

    Cognitive Complexity

    Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

    A method's cognitive complexity is based on a few simple rules:

    • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
    • Code is considered more complex for each "break in the linear flow of the code"
    • Code is considered more complex when "flow breaking structures are nested"

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