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| .codeclimate.yml | |
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| .dockerignore | |
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| .gitignore | |
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| Dockerfile | |
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| LICENSE | |
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| README.md | |
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| adage/adage/__init__.py | 0 | A 0 mins |
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| adage/adage/config-template.py | 172 | A 0 mins |
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| adage/adage/search_backend.py | 98 | A 2 hrs |
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| adage/adage/settings.py | 142 | A 0 mins |
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| adage/adage/urls.py | 49 | A 0 mins |
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| adage/adage/wsgi.py | 10 | A 0 mins |
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| adage/analyze/__init__.py | 0 | A 0 mins |
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| adage/analyze/admin.py | 7 | A 0 mins |
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| adage/analyze/api.py | 414 | C 1 day |
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| adage/analyze/management/__init__.py | 0 | A 0 mins |
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| adage/analyze/management/commands/__init__.py | 0 | A 0 mins |
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| adage/analyze/management/commands/add_ml_model.py | 79 | A 35 mins |
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| adage/analyze/management/commands/create_or_update_participation_type.py | 47 | A 35 mins |
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| adage/analyze/management/commands/delete_participation_type.py | 38 | A 25 mins |
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| adage/analyze/management/commands/import_activity.py | 124 | C 1 day |
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| adage/analyze/management/commands/import_data.py | 151 | C 1 day |
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| adage/analyze/management/commands/import_gene_network.py | 172 | C 1 day |
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| adage/analyze/management/commands/import_gene_sample_expr.py | 136 | C 1 day |
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| adage/analyze/management/commands/import_signature_gene_network.py | 129 | A 2 hrs |
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| adage/analyze/models.py | 192 | A 0 mins |
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| adage/analyze/search_indexes.py | 29 | A 0 mins |
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| adage/analyze/templates/search/indexes/analyze/experiment_text.txt | |
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| adage/analyze/templates/search/indexes/analyze/sample_text.txt | |
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| adage/analyze/tests.py | 945 | F 4 days |
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| adage/analyze/views.py | 0 | A 0 mins |
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| adage/manage.py | 6 | A 0 mins |
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| adage/requirements.txt | |
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| build.sh | |
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| data/PseudomonasAnnotation.tsv | |
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| data/README.md | |
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| data/all-pseudomonas-gene-normalized.pcl | |
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| data/gene_gene_network_cutoff_0.2.txt.gz | |
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| data/old/all-pseudomonas-gene-normalized_HWActivity_perGene_with_net300_100models_1_100_k=300_seed=123_ClusterByweighted_avgweight_network_ADAGE.txt | |
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| data/old/eADAGE_net300_allNodes_ADAGEnet_PAID_corCutoff0.4.txt | |
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| data/old/node_gene_network.txt | |
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| data/sample_signature_activity.txt | |
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| docker-compose.yml | |
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| fabfile/__init__.py | 1 | A 0 mins |
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| fabfile/adage_server.py | 240 | A 0 mins |
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| interface/.babelrc | |
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