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Code block style
Open

    1. Moral rights, such as the right of integrity, are not licensed under this Public License, nor are publicity, privacy, and/or other similar personality rights; however, to the extent possible, the Licensor waives and/or agrees not to assert any such rights held by the Licensor to the limited extent necessary to allow You to exercise the Licensed Rights, but not otherwise.
Severity: Info
Found in LICENSE.md by markdownlint

Trailing spaces
Open

The following YAML shows the supported key–value pairs for an author:
Severity: Info
Found in USAGE.md by markdownlint

MD009 - Trailing spaces

Tags: whitespace

Aliases: no-trailing-spaces

Parameters: br_spaces (number; default: 0)

This rule is triggered on any lines that end with whitespace. To fix this, find the line that is triggered and remove any trailing spaces from the end.

The brspaces parameter allows an exception to this rule for a specific amount of trailing spaces used to insert an explicit line break/br element. For example, set brspaces to 2 to allow exactly 2 spaces at the end of a line.

Note: you have to set brspaces to 2 or higher for this exception to take effect - you can't insert a br element with just a single trailing space, so if you set brspaces to 1, the exception will be disabled, just as if it was set to the default of 0.

Trailing spaces
Open

1.18. Imaging Platform, Broad Institute of Harvard and MIT, Cambridge, MA
Severity: Info
Found in content/00.front-matter.md by markdownlint

MD009 - Trailing spaces

Tags: whitespace

Aliases: no-trailing-spaces

Parameters: br_spaces (number; default: 0)

This rule is triggered on any lines that end with whitespace. To fix this, find the line that is triggered and remove any trailing spaces from the end.

The brspaces parameter allows an exception to this rule for a specific amount of trailing spaces used to insert an explicit line break/br element. For example, set brspaces to 2 to allow exactly 2 spaces at the end of a line.

Note: you have to set brspaces to 2 or higher for this exception to take effect - you can't insert a br element with just a single trailing space, so if you set brspaces to 1, the exception will be disabled, just as if it was set to the default of 0.

Trailing spaces
Open

1.25. National Center for Biotechnology Information and National Library of Medicine, National Institutes of Health, Bethesda, MD
Severity: Info
Found in content/00.front-matter.md by markdownlint

MD009 - Trailing spaces

Tags: whitespace

Aliases: no-trailing-spaces

Parameters: br_spaces (number; default: 0)

This rule is triggered on any lines that end with whitespace. To fix this, find the line that is triggered and remove any trailing spaces from the end.

The brspaces parameter allows an exception to this rule for a specific amount of trailing spaces used to insert an explicit line break/br element. For example, set brspaces to 2 to allow exactly 2 spaces at the end of a line.

Note: you have to set brspaces to 2 or higher for this exception to take effect - you can't insert a br element with just a single trailing space, so if you set brspaces to 1, the exception will be disabled, just as if it was set to the default of 0.

Inline HTML
Open

<link rel="stylesheet" href="https://use.fontawesome.com/releases/v5.7.2/css/all.css">
Severity: Info
Found in content/00.front-matter.md by markdownlint

MD033 - Inline HTML

Tags: html

Aliases: no-inline-html

This rule is triggered whenever raw HTML is used in a markdown document:

Inline HTML header

To fix this, use 'pure' markdown instead of including raw HTML:

# Markdown header

Rationale: Raw HTML is allowed in markdown, but this rule is included for those who want their documents to only include "pure" markdown, or for those who are rendering markdown documents in something other than HTML.

Inline HTML
Open

    {{author.name}}<sup>{% for number in author.affiliation_numbers %}2.{{number}}{%- if not loop.last -%},{%- endif -%}{% endfor %}⚄{%- if author.symbol_str is defined -%},{{author.symbol_str}}{%- endif -%}</sup>
Severity: Info
Found in content/00.front-matter.md by markdownlint

MD033 - Inline HTML

Tags: html

Aliases: no-inline-html

This rule is triggered whenever raw HTML is used in a markdown document:

Inline HTML header

To fix this, use 'pure' markdown instead of including raw HTML:

# Markdown header

Rationale: Raw HTML is allowed in markdown, but this rule is included for those who want their documents to only include "pure" markdown, or for those who are rendering markdown documents in something other than HTML.

Inline HTML
Open

    Enrico Ferrero<sup>1.8</sup>,
Severity: Info
Found in content/00.front-matter.md by markdownlint

MD033 - Inline HTML

Tags: html

Aliases: no-inline-html

This rule is triggered whenever raw HTML is used in a markdown document:

Inline HTML header

To fix this, use 'pure' markdown instead of including raw HTML:

# Markdown header

Rationale: Raw HTML is allowed in markdown, but this rule is included for those who want their documents to only include "pure" markdown, or for those who are rendering markdown documents in something other than HTML.

Inline HTML
Open

    Simina M. Boca<sup>1.31</sup>,
Severity: Info
Found in content/00.front-matter.md by markdownlint

MD033 - Inline HTML

Tags: html

Aliases: no-inline-html

This rule is triggered whenever raw HTML is used in a markdown document:

Inline HTML header

To fix this, use 'pure' markdown instead of including raw HTML:

# Markdown header

Rationale: Raw HTML is allowed in markdown, but this rule is included for those who want their documents to only include "pure" markdown, or for those who are rendering markdown documents in something other than HTML.

Inline HTML
Open

    Anthony Gitter<sup>1.34,1.35,†</sup>,
Severity: Info
Found in content/00.front-matter.md by markdownlint

MD033 - Inline HTML

Tags: html

Aliases: no-inline-html

This rule is triggered whenever raw HTML is used in a markdown document:

Inline HTML header

To fix this, use 'pure' markdown instead of including raw HTML:

# Markdown header

Rationale: Raw HTML is allowed in markdown, but this rule is included for those who want their documents to only include "pure" markdown, or for those who are rendering markdown documents in something other than HTML.

Header levels should only increment by one level at a time
Open

### Statement of Purpose
Severity: Info
Found in LICENSE-CC0.md by markdownlint

MD001 - Header levels should only increment by one level at a time

Tags: headers

Aliases: header-increment

This rule is triggered when you skip header levels in a markdown document, for example:

# Header 1

### Header 3

We skipped out a 2nd level header in this document

When using multiple header levels, nested headers should increase by only one level at a time:

# Header 1

## Header 2

### Header 3

#### Header 4

## Another Header 2

### Another Header 3

Ordered list item prefix
Open

3. The [`pandoc-citeproc` filter](https://github.com/jgm/pandoc-citeproc/blob/master/man/pandoc-citeproc.1.md) renders in-text citations and generates styled references.
Severity: Info
Found in USAGE.md by markdownlint

MD029 - Ordered list item prefix

Tags: ol

Aliases: ol-prefix

Parameters: style ("one", "ordered"; default "one")

This rule is triggered on ordered lists that do not either start with '1.' or do not have a prefix that increases in numerical order (depending on the configured style, which defaults to 'one').

Example valid list if the style is configured as 'one':

1. Do this.
1. Do that.
1. Done.

Example valid list if the style is configured as 'ordered':

1. Do this.
2. Do that.
3. Done.

Ordered list item prefix
Open

2. __Waiver.__ To the greatest extent permitted by, but not in contravention of, applicable law, Affirmer hereby overtly, fully, permanently, irrevocably and unconditionally waives, abandons, and surrenders all of Affirmer's Copyright and Related Rights and associated claims and causes of action, whether now known or unknown (including existing as well as future claims and causes of action), in the Work (i) in all territories worldwide, (ii) for the maximum duration provided by applicable law or treaty (including future time extensions), (iii) in any current or future medium and for any number of copies, and (iv) for any purpose whatsoever, including without limitation commercial, advertising or promotional purposes (the "Waiver"). Affirmer makes the Waiver for the benefit of each member of the public at large and to the detriment of Affirmer's heirs and successors, fully intending that such Waiver shall not be subject to revocation, rescission, cancellation, termination, or any other legal or equitable action to disrupt the quiet enjoyment of the Work by the public as contemplated by Affirmer's express Statement of Purpose.
Severity: Info
Found in LICENSE-CC0.md by markdownlint

MD029 - Ordered list item prefix

Tags: ol

Aliases: ol-prefix

Parameters: style ("one", "ordered"; default "one")

This rule is triggered on ordered lists that do not either start with '1.' or do not have a prefix that increases in numerical order (depending on the configured style, which defaults to 'one').

Example valid list if the style is configured as 'one':

1. Do this.
1. Do that.
1. Done.

Example valid list if the style is configured as 'ordered':

1. Do this.
2. Do that.
3. Done.

Trailing spaces
Open

1.24. Howard Hughes Medical Institute, Janelia Research Campus, Ashburn, VA
Severity: Info
Found in content/00.front-matter.md by markdownlint

MD009 - Trailing spaces

Tags: whitespace

Aliases: no-trailing-spaces

Parameters: br_spaces (number; default: 0)

This rule is triggered on any lines that end with whitespace. To fix this, find the line that is triggered and remove any trailing spaces from the end.

The brspaces parameter allows an exception to this rule for a specific amount of trailing spaces used to insert an explicit line break/br element. For example, set brspaces to 2 to allow exactly 2 spaces at the end of a line.

Note: you have to set brspaces to 2 or higher for this exception to take effect - you can't insert a br element with just a single trailing space, so if you set brspaces to 1, the exception will be disabled, just as if it was set to the default of 0.

Ordered list item prefix
Open

3. __Public License Fallback.__ Should any part of the Waiver for any reason be judged legally invalid or ineffective under applicable law, then the Waiver shall be preserved to the maximum extent permitted taking into account Affirmer's express Statement of Purpose. In addition, to the extent the Waiver is so judged Affirmer hereby grants to each affected person a royalty-free, non transferable, non sublicensable, non exclusive, irrevocable and unconditional license to exercise Affirmer's Copyright and Related Rights in the Work (i) in all territories worldwide, (ii) for the maximum duration provided by applicable law or treaty (including future time extensions), (iii) in any current or future medium and for any number of copies, and (iv) for any purpose whatsoever, including without limitation commercial, advertising or promotional purposes (the "License"). The License shall be deemed effective as of the date CC0 was applied by Affirmer to the Work. Should any part of the License for any reason be judged legally invalid or ineffective under applicable law, such partial invalidity or ineffectiveness shall not invalidate the remainder of the License, and in such case Affirmer hereby affirms that he or she will not (i) exercise any of his or her remaining Copyright and Related Rights in the Work or (ii) assert any associated claims and causes of action with respect to the Work, in either case contrary to Affirmer's express Statement of Purpose.
Severity: Info
Found in LICENSE-CC0.md by markdownlint

MD029 - Ordered list item prefix

Tags: ol

Aliases: ol-prefix

Parameters: style ("one", "ordered"; default "one")

This rule is triggered on ordered lists that do not either start with '1.' or do not have a prefix that increases in numerical order (depending on the configured style, which defaults to 'one').

Example valid list if the style is configured as 'one':

1. Do this.
1. Do that.
1. Done.

Example valid list if the style is configured as 'ordered':

1. Do this.
2. Do that.
3. Done.

Trailing spaces
Open

1.28. Department of Genetics, Stanford University, Stanford, CA
Severity: Info
Found in content/00.front-matter.md by markdownlint

MD009 - Trailing spaces

Tags: whitespace

Aliases: no-trailing-spaces

Parameters: br_spaces (number; default: 0)

This rule is triggered on any lines that end with whitespace. To fix this, find the line that is triggered and remove any trailing spaces from the end.

The brspaces parameter allows an exception to this rule for a specific amount of trailing spaces used to insert an explicit line break/br element. For example, set brspaces to 2 to allow exactly 2 spaces at the end of a line.

Note: you have to set brspaces to 2 or higher for this exception to take effect - you can't insert a br element with just a single trailing space, so if you set brspaces to 1, the exception will be disabled, just as if it was set to the default of 0.

Inline HTML
Open

<sup>†</sup> --- To whom correspondence should be addressed: gitter@biostat.wisc.edu (A.G.) and greenescientist@gmail.com (C.S.G.)
Severity: Info
Found in content/00.front-matter.md by markdownlint

MD033 - Inline HTML

Tags: html

Aliases: no-inline-html

This rule is triggered whenever raw HTML is used in a markdown document:

Inline HTML header

To fix this, use 'pure' markdown instead of including raw HTML:

# Markdown header

Rationale: Raw HTML is allowed in markdown, but this rule is included for those who want their documents to only include "pure" markdown, or for those who are rendering markdown documents in something other than HTML.

Trailing punctuation in header
Open

### Section 5 – Disclaimer of Warranties and Limitation of Liability.
Severity: Info
Found in LICENSE.md by markdownlint

MD026 - Trailing punctuation in header

Tags: headers

Aliases: no-trailing-punctuation

Parameters: punctuation (string; default ".,;:!?")

This rule is triggered on any header that has a punctuation character as the last character in the line:

# This is a header.

To fix this, remove any trailing punctuation:

# This is a header

Note: The punctuation parameter can be used to specify what characters class as punctuation at the end of the header. For example, you can set it to '.,;:!' to allow headers with question marks in them, such as might be used in an FAQ.

Inline HTML
Open

    Michael Zietz<sup>1.2</sup>,
Severity: Info
Found in content/00.front-matter.md by markdownlint

MD033 - Inline HTML

Tags: html

Aliases: no-inline-html

This rule is triggered whenever raw HTML is used in a markdown document:

Inline HTML header

To fix this, use 'pure' markdown instead of including raw HTML:

# Markdown header

Rationale: Raw HTML is allowed in markdown, but this rule is included for those who want their documents to only include "pure" markdown, or for those who are rendering markdown documents in something other than HTML.

Inline HTML
Open

    Marwin H.S. Segler<sup>1.30</sup>,
Severity: Info
Found in content/00.front-matter.md by markdownlint

MD033 - Inline HTML

Tags: html

Aliases: no-inline-html

This rule is triggered whenever raw HTML is used in a markdown document:

Inline HTML header

To fix this, use 'pure' markdown instead of including raw HTML:

# Markdown header

Rationale: Raw HTML is allowed in markdown, but this rule is included for those who want their documents to only include "pure" markdown, or for those who are rendering markdown documents in something other than HTML.

Ordered list item prefix
Open

9. For references that do not have any of the above persistent identifiers, the citation key does not need to include a prefix.
Severity: Info
Found in USAGE.md by markdownlint

MD029 - Ordered list item prefix

Tags: ol

Aliases: ol-prefix

Parameters: style ("one", "ordered"; default "one")

This rule is triggered on ordered lists that do not either start with '1.' or do not have a prefix that increases in numerical order (depending on the configured style, which defaults to 'one').

Example valid list if the style is configured as 'one':

1. Do this.
1. Do that.
1. Done.

Example valid list if the style is configured as 'ordered':

1. Do this.
2. Do that.
3. Done.
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