File __init__.py has 381 lines of code (exceeds 250 allowed). Consider refactoring.

Open

from __future__ import annotations

import re
from collections import defaultdict
from dataclasses import dataclass, field

Function amsthm has a Cognitive Complexity of 34 (exceeds 5 allowed). Consider refactoring.

Open

def amsthm(elem: Element, doc: Doc) -> None:
    """General amsthm transformation working for all document types.

    Essentially we replicate LaTeX amsthm behavior in this filter.
    """

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Function resolve_ref has a Cognitive Complexity of 24 (exceeds 5 allowed). Consider refactoring.

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def resolve_ref(elem: Element, doc: Doc) -> pf.Str | None:
    """Resolve references to theorem numbers.

    Consider this as post-process ref for general output formats.
    """

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Function merge_consecutive_type has a Cognitive Complexity of 24 (exceeds 5 allowed). Consider refactoring.

Open

def merge_consecutive_type(
    elem: Element,
    doc: Doc,
    ElementType: type[EmphLike] = pf.Emph,
) -> list[EmphLike] | None:

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Function from_doc has a Cognitive Complexity of 23 (exceeds 5 allowed). Consider refactoring.

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    def from_doc(
        cls,
        doc: Doc,
    ) -> DocOptions:
        options: dict[

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Function to_panflute_theorem_header has a Cognitive Complexity of 22 (exceeds 5 allowed). Consider refactoring.

Open

    def to_panflute_theorem_header(
        self,
        options: DocOptions,
        id: str | None,
        info: str | None,

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Function amsthm_latex has a Cognitive Complexity of 13 (exceeds 5 allowed). Consider refactoring.

Open

def amsthm_latex(elem: Element, doc: Doc) -> pf.RawBlock | None:
    """Transform amsthm defintion to LaTeX package specifications."""
    # check if it is a Div, and the class is an amsthm environment
    options: DocOptions = doc._amsthm
    if isinstance(elem, pf.Div):

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Function cite_to_ref has a Cognitive Complexity of 8 (exceeds 5 allowed). Consider refactoring.

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def cite_to_ref(elem: pf.Cite, doc: Doc, check_id: dict[str, str] | None = None) -> pf.RawInline | None:
    """Cite to raw LaTeX ref/eqref.

    :param check_id: if provided, transform only if id is in `check_id`

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Function cancel_repeated_type has a Cognitive Complexity of 8 (exceeds 5 allowed). Consider refactoring.

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def cancel_repeated_type(
    elem: Element,
    doc: Doc,
    ElementType: type[EmphLike] = pf.Emph,
) -> list[EmphLike] | None:

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Avoid deeply nested control flow statements.

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                    if isinstance(elem_next_next, ElementType):
                        merged = list(elem_cur.content) + [pf.Space] + list(elem_next_next.content)
                        content = list(content[:i]) + [ElementType(*merged)] + list(content[i + 3 :])
                        mutated = True
        if mutated:

Function setup_logging has 6 arguments (exceeds 4 allowed). Consider refactoring.

Open

def setup_logging(

Avoid deeply nested control flow statements.

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                        if isinstance(value, list):
                            for v in value:
                                theorem = NewTheorem(style, v, text=name_to_text.get(v, ""), shared_counter=key)
                                theorems[theorem.class_name] = theorem
                        else:

Avoid too many return statements within this function.

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    return None

Avoid too many return statements within this function.

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                    return pf.Str(options.identifiers[id])

Avoid too many return statements within this function.

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                    return pf.Str(f"({options.identifiers[id]})")

Function latex has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.

Open

    def latex(self) -> str:
        res = [r"\newtheorem"]
        if not self.numbered:
            res.append(f"*{{{self.env_name}}}{{{self.text}}}")
        elif self.shared_counter is None:

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Function latex has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.

Open

    def latex(self) -> str:
        cur_style: str = ""
        res: list[str] = []
        for theorem in self.theorems.values():
            # proof is predefined in amsthm

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