kjappelbaum/pyepal

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src/pyepal/pal/pal_sklearn.py

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# -*- coding: utf-8 -*-
# Copyright 2020 PyePAL authors
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
#      http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.


"""PAL using Sklearn GPR models"""
import concurrent.futures
from functools import partial

import numpy as np

from .pal_base import PALBase
from .validate_inputs import validate_njobs, validate_sklearn_gpr_models

__all__ = ["PALSklearn"]


def _train_model_picklable(i, models, design_space, objectives, sampled):
    model = models[i]
    model.fit(
        design_space[sampled[:, i]],
        objectives[sampled[:, i], i].reshape(-1, 1),
    )
    return model


class PALSklearn(PALBase):
    """PAL class for a list of Sklearn (GPR) models, with one model per objective"""

    def __init__(self, *args, **kwargs):
        """Construct the PALSklearn instance

        Args:
            X_design (np.array): Design space (feature matrix)
            models (list): Machine learning models. You can provide a list of
                GaussianProcessRegressor instances or a list of *fitted*
                RandomizedSearchCV/GridSearchCV instances with
                GaussianProcessRegressor models
            ndim (int): Number of objectives
            epsilon (Union[list, float], optional): Epsilon hyperparameter.
                Defaults to 0.01.
            delta (float, optional): Delta hyperparameter. Defaults to 0.05.
            beta_scale (float, optional): Scaling parameter for beta.
                If not equal to 1, the theoretical guarantees do not necessarily hold.
                Also note that the parametrization depends on the kernel type.
                Defaults to 1/9.
            goals (List[str], optional): If a list, provide "min" for every objective
                that shall be minimized and "max" for every objective
                that shall be maximized. Defaults to None, which means
                that the code maximizes all objectives.
            coef_var_threshold (float, optional): Use only points with
                a coefficient of variation below this threshold
                in the classification step. Defaults to 3.
            n_jobs (int): Number of parallel processes that are used to fit
                the GPR models. Defaults to 1.
        """
        self.n_jobs = validate_njobs(kwargs.pop("n_jobs", 1))
        super().__init__(*args, **kwargs)

        self.models = validate_sklearn_gpr_models(self.models, self.ndim)

    def _set_data(self):
        pass

    def _train(self):
        train_single_partial = partial(
            _train_model_picklable,
            models=self.models,
            design_space=self.design_space,
            objectives=self.y,
            sampled=self.sampled,
        )
        models = []
        with concurrent.futures.ProcessPoolExecutor(max_workers=self.n_jobs) as executor:
            for model in executor.map(train_single_partial, range(self.ndim)):
                models.append(model)
        self.models = models

    def _predict(self):
        means, stds = [], []
        for model in self.models:
            mean, std = model.predict(self.design_space, return_std=True)
            means.append(mean.reshape(-1, 1))
            stds.append(std.reshape(-1, 1))

        self._means = np.hstack(means)
        self.std = np.hstack(stds)

    def _set_hyperparameters(self):
        pass