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lomereiter/bioruby-sambamba

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Showing 2 of 2 total issues

Class Alignment has 28 methods (exceeds 20 allowed). Consider refactoring.
Open

    class Alignment
      
      # Creates a new object from MessagePack record
      def initialize(obj, reference_sequence_names)
        @obj = obj
Severity: Minor
Found in lib/bio-sambamba/alignment.rb - About 3 hrs to fix

    Method each has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
    Open

          def each
        return enum_for(:each) if not block_given?

        command = get_command
    Severity: Minor
    Found in lib/bio-sambamba/alignmentiterator.rb - About 25 mins to fix

    Cognitive Complexity

    Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

    A method's cognitive complexity is based on a few simple rules:

    • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
    • Code is considered more complex for each "break in the linear flow of the code"
    • Code is considered more complex when "flow breaking structures are nested"

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