File visuals.py has 2311 lines of code (exceeds 250 allowed). Consider refactoring. Open
"""General plotting functions for the deepof package."""
# @author lucasmiranda42
# encoding: utf-8
# module deepof
Function tag_annotated_frames has a Cognitive Complexity of 62 (exceeds 5 allowed). Consider refactoring. Open
def tag_annotated_frames(
frame,
font,
frame_speeds,
animal_ids,- Read upRead up
Cognitive Complexity
Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.
A method's cognitive complexity is based on a few simple rules:
- Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
- Code is considered more complex for each "break in the linear flow of the code"
- Code is considered more complex when "flow breaking structures are nested"
Further reading
Function plot_gantt has a Cognitive Complexity of 51 (exceeds 5 allowed). Consider refactoring. Open
def plot_gantt(
coordinates: project,
experiment_id: str,
soft_counts: table_dict = None,
supervised_annotations: table_dict = None,- Read upRead up
Cognitive Complexity
Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.
A method's cognitive complexity is based on a few simple rules:
- Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
- Code is considered more complex for each "break in the linear flow of the code"
- Code is considered more complex when "flow breaking structures are nested"
Further reading
Function plot_embeddings has a Cognitive Complexity of 45 (exceeds 5 allowed). Consider refactoring. Open
def plot_embeddings(
coordinates: coordinates,
embeddings: table_dict = None,
soft_counts: table_dict = None,
breaks: table_dict = None,- Read upRead up
Cognitive Complexity
Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.
A method's cognitive complexity is based on a few simple rules:
- Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
- Code is considered more complex for each "break in the linear flow of the code"
- Code is considered more complex when "flow breaking structures are nested"
Further reading
Function animate_skeleton has a Cognitive Complexity of 36 (exceeds 5 allowed). Consider refactoring. Open
def animate_skeleton(
coordinates: coordinates,
experiment_id: str,
animal_id: list = None,
center: str = "arena",- Read upRead up
Cognitive Complexity
Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.
A method's cognitive complexity is based on a few simple rules:
- Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
- Code is considered more complex for each "break in the linear flow of the code"
- Code is considered more complex when "flow breaking structures are nested"
Further reading
Function plot_transitions has a Cognitive Complexity of 34 (exceeds 5 allowed). Consider refactoring. Open
def plot_transitions(
coordinates: coordinates,
embeddings: table_dict,
soft_counts: table_dict,
breaks: table_dict = None,- Read upRead up
Cognitive Complexity
Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.
A method's cognitive complexity is based on a few simple rules:
- Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
- Code is considered more complex for each "break in the linear flow of the code"
- Code is considered more complex when "flow breaking structures are nested"
Further reading
Function plot_embeddings has 24 arguments (exceeds 4 allowed). Consider refactoring. Open
def plot_embeddings(Function heatmap has a Cognitive Complexity of 20 (exceeds 5 allowed). Consider refactoring. Open
def heatmap(
dframe: pd.DataFrame,
bodyparts: List,
xlim: tuple = None,
ylim: tuple = None,- Read upRead up
Cognitive Complexity
Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.
A method's cognitive complexity is based on a few simple rules:
- Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
- Code is considered more complex for each "break in the linear flow of the code"
- Code is considered more complex when "flow breaking structures are nested"
Further reading
Function annotate_video has a Cognitive Complexity of 20 (exceeds 5 allowed). Consider refactoring. Open
def annotate_video(
coordinates: coordinates,
tag_dict: pd.DataFrame,
vid_index: int,
frame_limit: int = np.inf,- Read upRead up
Cognitive Complexity
Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.
A method's cognitive complexity is based on a few simple rules:
- Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
- Code is considered more complex for each "break in the linear flow of the code"
- Code is considered more complex when "flow breaking structures are nested"
Further reading
Function plot_enrichment has 20 arguments (exceeds 4 allowed). Consider refactoring. Open
def plot_enrichment(Function _process_animation_data has a Cognitive Complexity of 18 (exceeds 5 allowed). Consider refactoring. Open
def _process_animation_data(
coordinates,
experiment_id,
animal_id,
center,- Read upRead up
Cognitive Complexity
Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.
A method's cognitive complexity is based on a few simple rules:
- Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
- Code is considered more complex for each "break in the linear flow of the code"
- Code is considered more complex when "flow breaking structures are nested"
Further reading
Function plot_enrichment has a Cognitive Complexity of 18 (exceeds 5 allowed). Consider refactoring. Open
def plot_enrichment(
coordinates: coordinates,
embeddings: table_dict = None,
soft_counts: table_dict = None,
breaks: table_dict = None,- Read upRead up
Cognitive Complexity
Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.
A method's cognitive complexity is based on a few simple rules:
- Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
- Code is considered more complex for each "break in the linear flow of the code"
- Code is considered more complex when "flow breaking structures are nested"
Further reading
Function plot_heatmaps has 17 arguments (exceeds 4 allowed). Consider refactoring. Open
def plot_heatmaps(Function plot_cluster_detection_performance has a Cognitive Complexity of 15 (exceeds 5 allowed). Consider refactoring. Open
def plot_cluster_detection_performance(
coordinates: coordinates,
chunk_stats: pd.DataFrame,
cluster_gbm_performance: dict,
hard_counts: np.ndarray,- Read upRead up
Cognitive Complexity
Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.
A method's cognitive complexity is based on a few simple rules:
- Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
- Code is considered more complex for each "break in the linear flow of the code"
- Code is considered more complex when "flow breaking structures are nested"
Further reading
Function animate_skeleton has 15 arguments (exceeds 4 allowed). Consider refactoring. Open
def animate_skeleton(Function plot_transitions has 15 arguments (exceeds 4 allowed). Consider refactoring. Open
def plot_transitions(Function plot_heatmaps has a Cognitive Complexity of 14 (exceeds 5 allowed). Consider refactoring. Open
def plot_heatmaps(
coordinates: coordinates,
bodyparts: list,
center: str = "arena",
align: str = None,- Read upRead up
Cognitive Complexity
Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.
A method's cognitive complexity is based on a few simple rules:
- Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
- Code is considered more complex for each "break in the linear flow of the code"
- Code is considered more complex when "flow breaking structures are nested"
Further reading
Function _filter_embeddings has a Cognitive Complexity of 14 (exceeds 5 allowed). Consider refactoring. Open
def _filter_embeddings(
coordinates,
embeddings,
soft_counts,
breaks,- Read upRead up
Cognitive Complexity
Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.
A method's cognitive complexity is based on a few simple rules:
- Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
- Code is considered more complex for each "break in the linear flow of the code"
- Code is considered more complex when "flow breaking structures are nested"
Further reading
Function tag_annotated_frames has 13 arguments (exceeds 4 allowed). Consider refactoring. Open
def tag_annotated_frames(Function plot_stationary_entropy has 13 arguments (exceeds 4 allowed). Consider refactoring. Open
def plot_stationary_entropy(Function plot_distance_between_conditions has 11 arguments (exceeds 4 allowed). Consider refactoring. Open
def plot_distance_between_conditions(Function plot_arena has a Cognitive Complexity of 11 (exceeds 5 allowed). Consider refactoring. Open
def plot_arena(
coordinates: coordinates, center: str, color: str, ax: Any, i: Union[int, str]
):
"""Plot the arena in the given canvas.
- Read upRead up
Cognitive Complexity
Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.
A method's cognitive complexity is based on a few simple rules:
- Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
- Code is considered more complex for each "break in the linear flow of the code"
- Code is considered more complex when "flow breaking structures are nested"
Further reading
Function heatmap has 10 arguments (exceeds 4 allowed). Consider refactoring. Open
def heatmap(Function output_videos_per_cluster has 10 arguments (exceeds 4 allowed). Consider refactoring. Open
def output_videos_per_cluster(Function output_unsupervised_annotated_video has a Cognitive Complexity of 11 (exceeds 5 allowed). Consider refactoring. Open
def output_unsupervised_annotated_video(
video_path: str,
breaks: list,
soft_counts: np.ndarray,
frame_rate: int = 25,- Read upRead up
Cognitive Complexity
Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.
A method's cognitive complexity is based on a few simple rules:
- Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
- Code is considered more complex for each "break in the linear flow of the code"
- Code is considered more complex when "flow breaking structures are nested"
Further reading
Function _process_animation_data has 10 arguments (exceeds 4 allowed). Consider refactoring. Open
def _process_animation_data(Function output_cluster_video has a Cognitive Complexity of 11 (exceeds 5 allowed). Consider refactoring. Open
def output_cluster_video(
cap: Any,
out: Any,
frame_mask: list,
v_width: int,- Read upRead up
Cognitive Complexity
Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.
A method's cognitive complexity is based on a few simple rules:
- Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
- Code is considered more complex for each "break in the linear flow of the code"
- Code is considered more complex when "flow breaking structures are nested"
Further reading
Function _filter_embeddings has 9 arguments (exceeds 4 allowed). Consider refactoring. Open
def _filter_embeddings(Function export_annotated_video has 9 arguments (exceeds 4 allowed). Consider refactoring. Open
def export_annotated_video(Function plot_gantt has 8 arguments (exceeds 4 allowed). Consider refactoring. Open
def plot_gantt(Function output_unsupervised_annotated_video has 8 arguments (exceeds 4 allowed). Consider refactoring. Open
def output_unsupervised_annotated_video(Function plot_cluster_detection_performance has 8 arguments (exceeds 4 allowed). Consider refactoring. Open
def plot_cluster_detection_performance(Function export_annotated_video has a Cognitive Complexity of 9 (exceeds 5 allowed). Consider refactoring. Open
def export_annotated_video(
coordinates: coordinates,
soft_counts: dict = None,
breaks: dict = None,
experiment_id: str = None,- Read upRead up
Cognitive Complexity
Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.
A method's cognitive complexity is based on a few simple rules:
- Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
- Code is considered more complex for each "break in the linear flow of the code"
- Code is considered more complex when "flow breaking structures are nested"
Further reading
Function plot_shap_swarm_per_cluster has 7 arguments (exceeds 4 allowed). Consider refactoring. Open
def plot_shap_swarm_per_cluster(Function output_cluster_video has 7 arguments (exceeds 4 allowed). Consider refactoring. Open
def output_cluster_video(Function plot_normative_log_likelihood has 7 arguments (exceeds 4 allowed). Consider refactoring. Open
def plot_normative_log_likelihood(Function annotate_video has 6 arguments (exceeds 4 allowed). Consider refactoring. Open
def annotate_video(Function plot_stationary_entropy has a Cognitive Complexity of 8 (exceeds 5 allowed). Consider refactoring. Open
def plot_stationary_entropy(
coordinates: coordinates,
embeddings: table_dict,
soft_counts: table_dict,
breaks: table_dict = None,- Read upRead up
Cognitive Complexity
Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.
A method's cognitive complexity is based on a few simple rules:
- Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
- Code is considered more complex for each "break in the linear flow of the code"
- Code is considered more complex when "flow breaking structures are nested"
Further reading
Function _scatter_embeddings has 6 arguments (exceeds 4 allowed). Consider refactoring. Open
def _scatter_embeddings(Function plot_arena has 5 arguments (exceeds 4 allowed). Consider refactoring. Open
def plot_arena(