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<li><a class="reference internal" href="#">deepof.utils.get_arenas</a><ul>
<li><a class="reference internal" href="#deepof.utils.get_arenas"><code class="docutils literal notranslate"><span class="pre">get_arenas()</span></code></a></li>
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<section id="deepof-utils-get-arenas">
<h1>deepof.utils.get_arenas<a class="headerlink" href="#deepof-utils-get-arenas" title="Permalink to this heading"></a></h1>
<dl class="py function">
<dt class="sig sig-object py" id="deepof.utils.get_arenas">
<span class="sig-prename descclassname"><span class="pre">deepof.utils.</span></span><span class="sig-name descname"><span class="pre">get_arenas</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">coordinates</span></span><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="n"><span class="pre">deepof_coordinates</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">tables</span></span><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="n"><span class="pre">deepof_table_dict</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">arena</span></span><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="n"><span class="pre">str</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">arena_dims</span></span><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="n"><span class="pre">int</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">project_path</span></span><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="n"><span class="pre">str</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">project_name</span></span><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="n"><span class="pre">str</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">segmentation_model_path</span></span><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="n"><span class="pre">str</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">videos</span></span><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="n"><span class="pre">Optional</span><span class="p"><span class="pre">[</span></span><span class="pre">list</span><span class="p"><span class="pre">]</span></span></span><span class="w"> </span><span class="o"><span class="pre">=</span></span><span class="w"> </span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">debug</span></span><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="n"><span class="pre">bool</span></span><span class="w"> </span><span class="o"><span class="pre">=</span></span><span class="w"> </span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">test</span></span><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="n"><span class="pre">bool</span></span><span class="w"> </span><span class="o"><span class="pre">=</span></span><span class="w"> </span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#deepof.utils.get_arenas" title="Permalink to this definition"></a></dt>
<dd><p>Extract arena parameters from a project or coordinates object.</p>
<dl class="field-list simple">
<dt class="field-odd">Parameters<span class="colon">:</span></dt>
<dd class="field-odd"><ul class="simple">
<li><p><strong>coordinates</strong> (<em>coordinates</em>) – Coordinates object.</p></li>
<li><p><strong>tables</strong> (<em>table_dict</em>) – TableDict object containing tracklets per animal.</p></li>
<li><p><strong>arena</strong> (<em>str</em>) – Arena type (must be either “polygonal-manual”, “circular-manual”, “polygonal-autodetect”, or “circular-autodetect”).</p></li>
<li><p><strong>arena_dims</strong> (<em>int</em>) – Arena dimensions.</p></li>
<li><p><strong>project_path</strong> (<em>str</em>) – Path to project.</p></li>
<li><p><strong>project_name</strong> (<em>str</em>) – Name of project.</p></li>
<li><p><strong>segmentation_model_path</strong> (<em>str</em>) – Path to segmentation model used for automatic arena detection.</p></li>
<li><p><strong>videos</strong> (<em>list</em>) – List of videos to extract arena parameters from. Defaults to None (all videos are used).</p></li>
<li><p><strong>debug</strong> (<em>bool</em>) – If True, a frame per video with the detected arena is saved. Defaults to False.</p></li>
<li><p><strong>test</strong> (<em>bool</em>) – If True, the function is run in test mode. Defaults to False.</p></li>
</ul>
</dd>
<dt class="field-even">Returns<span class="colon">:</span></dt>
<dd class="field-even"><p>List of arena parameters.</p>
</dd>
<dt class="field-odd">Return type<span class="colon">:</span></dt>
<dd class="field-odd"><p>arena_params (list)</p>
</dd>
</dl>
</dd></dl>

</section>


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