lucasmiranda42/deepof

View on GitHub
docs/build/html/_generated/deepof.utils.load_table.html

Summary

Maintainability
Test Coverage
<!DOCTYPE html>
<html class="writer-html5" lang="en" >
<head>
  <meta charset="utf-8" /><meta name="generator" content="Docutils 0.18.1: http://docutils.sourceforge.net/" />

  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
  <title>deepof.utils.load_table &mdash; deepof 0.6.2 documentation</title>
      <link rel="stylesheet" href="../_static/pygments.css" type="text/css" />
      <link rel="stylesheet" href="../_static/css/theme.css" type="text/css" />
      <link rel="stylesheet" href="../_static/jupyter-sphinx.css" type="text/css" />
      <link rel="stylesheet" href="../_static/thebelab.css" type="text/css" />
      <link rel="stylesheet" href="../_static/custom.css" type="text/css" />
    <link rel="shortcut icon" href="../_static/deepof.ico"/>
  <!--[if lt IE 9]>
    <script src="../_static/js/html5shiv.min.js"></script>
  <![endif]-->
  
        <script data-url_root="../" id="documentation_options" src="../_static/documentation_options.js"></script>
        <script src="../_static/jquery.js"></script>
        <script src="../_static/underscore.js"></script>
        <script src="../_static/_sphinx_javascript_frameworks_compat.js"></script>
        <script src="../_static/doctools.js"></script>
        <script src="../_static/sphinx_highlight.js"></script>
        <script src="../_static/thebelab-helper.js"></script>
        <script src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
        <script src="https://cdn.jsdelivr.net/npm/@jupyter-widgets/html-manager@^1.0.1/dist/embed-amd.js"></script>
        <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
    <script src="../_static/js/theme.js"></script>
    <link rel="index" title="Index" href="../genindex.html" />
    <link rel="search" title="Search" href="../search.html" /> 
</head>

<body class="wy-body-for-nav"> 
  <div class="wy-grid-for-nav">
    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
      <div class="wy-side-scroll">
        <div class="wy-side-nav-search" >

          
          
          <a href="../index.html">
            
              <img src="../_static/deepof_sidebar.ico" class="logo" alt="Logo"/>
          </a>
<div role="search">
  <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">
    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
    <input type="hidden" name="check_keywords" value="yes" />
    <input type="hidden" name="area" value="default" />
  </form>
</div>
        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
              <!-- Local TOC -->
              <div class="local-toc"><ul>
<li><a class="reference internal" href="#">deepof.utils.load_table</a><ul>
<li><a class="reference internal" href="#deepof.utils.load_table"><code class="docutils literal notranslate"><span class="pre">load_table()</span></code></a></li>
</ul>
</li>
</ul>
</div>
        </div>
      </div>
    </nav>

    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
          <a href="../index.html">deepof</a>
      </nav>

      <div class="wy-nav-content">
        <div class="rst-content">
          <div role="navigation" aria-label="Page navigation">
  <ul class="wy-breadcrumbs">
      <li><a href="../index.html" class="icon icon-home" aria-label="Home"></a></li>
      <li class="breadcrumb-item active">deepof.utils.load_table</li>
      <li class="wy-breadcrumbs-aside">
            <a href="../_sources/_generated/deepof.utils.load_table.rst.txt" rel="nofollow"> View page source</a>
      </li>
  </ul>
  <hr/>
</div>
          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
           <div itemprop="articleBody">
             
  
<style>
/* CSS overrides for sphinx_rtd_theme */

/* 24px margin */
.nbinput.nblast.container,
.nboutput.nblast.container {
    margin-bottom: 19px;  /* padding has already 5px */
}

/* ... except between code cells! */
.nblast.container + .nbinput.container {
    margin-top: -19px;
}

.admonition > p:before {
    margin-right: 4px;  /* make room for the exclamation icon */
}

/* Fix math alignment, see https://github.com/rtfd/sphinx_rtd_theme/pull/686 */
.math {
    text-align: unset;
}
</style>
<section id="deepof-utils-load-table">
<h1>deepof.utils.load_table<a class="headerlink" href="#deepof-utils-load-table" title="Permalink to this heading"></a></h1>
<dl class="py function">
<dt class="sig sig-object py" id="deepof.utils.load_table">
<span class="sig-prename descclassname"><span class="pre">deepof.utils.</span></span><span class="sig-name descname"><span class="pre">load_table</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">tab</span></span><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="n"><span class="pre">str</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">table_path</span></span><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="n"><span class="pre">str</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">table_format</span></span><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="n"><span class="pre">str</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">rename_bodyparts</span></span><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="n"><span class="pre">Optional</span><span class="p"><span class="pre">[</span></span><span class="pre">list</span><span class="p"><span class="pre">]</span></span></span><span class="w"> </span><span class="o"><span class="pre">=</span></span><span class="w"> </span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">animal_ids</span></span><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="n"><span class="pre">Optional</span><span class="p"><span class="pre">[</span></span><span class="pre">list</span><span class="p"><span class="pre">]</span></span></span><span class="w"> </span><span class="o"><span class="pre">=</span></span><span class="w"> </span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#deepof.utils.load_table" title="Permalink to this definition"></a></dt>
<dd><p>Loads a table into a structured pandas data frame.</p>
<p>Supports inputs from both DeepLabCut and (S)LEAP.</p>
<dl class="field-list simple">
<dt class="field-odd">Parameters<span class="colon">:</span></dt>
<dd class="field-odd"><ul class="simple">
<li><p><strong>tab</strong> (<em>str</em>) – Name of the file containing the tracks.</p></li>
<li><p><strong>table_path</strong> (<em>string</em>) – Full path to the file containing the tracks.</p></li>
<li><p><strong>table_format</strong> (<em>str</em>) – type of the files to load, coming from either DeepLabCut (CSV and H5) and (S)LEAP (NPY).</p></li>
<li><p><strong>rename_bodyparts</strong> (<em>list</em>) – list of names to use for the body parts in the provided tracking files. The order should match that of the columns in your DLC tables or the node dimensions on your (S)LEAP .npy files.</p></li>
</ul>
</dd>
<dt class="field-even">Returns<span class="colon">:</span></dt>
<dd class="field-even"><p>Data frame containing the loaded tracks. Likelihood for (S)LEAP files is imputed as 1.0 (tracked values) or 0.0 (missing values).</p>
</dd>
<dt class="field-odd">Return type<span class="colon">:</span></dt>
<dd class="field-odd"><p>loaded_tab (pd.DataFrame)</p>
</dd>
</dl>
</dd></dl>

</section>


           </div>
          </div>
          <footer>

  <hr/>

  <div role="contentinfo">
    <p>&#169; Copyright 2024, Lucas Miranda.</p>
  </div>

  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
    provided by <a href="https://readthedocs.org">Read the Docs</a>.
   

</footer>
        </div>
      </div>
    </section>
  </div>
  <script>
      jQuery(function () {
          SphinxRtdTheme.Navigation.enable(true);
      });
  </script> 

</body>
</html>