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<li><a class="reference internal" href="#">deepof.visuals.plot_heatmaps</a><ul>
<li><a class="reference internal" href="#deepof.visuals.plot_heatmaps"><code class="docutils literal notranslate"><span class="pre">plot_heatmaps()</span></code></a></li>
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<section id="deepof-visuals-plot-heatmaps">
<h1>deepof.visuals.plot_heatmaps<a class="headerlink" href="#deepof-visuals-plot-heatmaps" title="Permalink to this heading"></a></h1>
<dl class="py function">
<dt class="sig sig-object py" id="deepof.visuals.plot_heatmaps">
<span class="sig-prename descclassname"><span class="pre">deepof.visuals.</span></span><span class="sig-name descname"><span class="pre">plot_heatmaps</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">coordinates</span></span><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="n"><span class="pre">deepof_coordinates</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">bodyparts</span></span><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="n"><span class="pre">list</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">center</span></span><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="n"><span class="pre">str</span></span><span class="w"> </span><span class="o"><span class="pre">=</span></span><span class="w"> </span><span class="default_value"><span class="pre">'arena'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">align</span></span><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="n"><span class="pre">Optional</span><span class="p"><span class="pre">[</span></span><span class="pre">str</span><span class="p"><span class="pre">]</span></span></span><span class="w"> </span><span class="o"><span class="pre">=</span></span><span class="w"> </span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">exp_condition</span></span><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="n"><span class="pre">Optional</span><span class="p"><span class="pre">[</span></span><span class="pre">str</span><span class="p"><span class="pre">]</span></span></span><span class="w"> </span><span class="o"><span class="pre">=</span></span><span class="w"> </span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">condition_value</span></span><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="n"><span class="pre">Optional</span><span class="p"><span class="pre">[</span></span><span class="pre">str</span><span class="p"><span class="pre">]</span></span></span><span class="w"> </span><span class="o"><span class="pre">=</span></span><span class="w"> </span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">display_arena</span></span><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="n"><span class="pre">bool</span></span><span class="w"> </span><span class="o"><span class="pre">=</span></span><span class="w"> </span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">xlim</span></span><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="n"><span class="pre">Optional</span><span class="p"><span class="pre">[</span></span><span class="pre">float</span><span class="p"><span class="pre">]</span></span></span><span class="w"> </span><span class="o"><span class="pre">=</span></span><span class="w"> </span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">ylim</span></span><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="n"><span class="pre">Optional</span><span class="p"><span class="pre">[</span></span><span class="pre">float</span><span class="p"><span class="pre">]</span></span></span><span class="w"> </span><span class="o"><span class="pre">=</span></span><span class="w"> </span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">save</span></span><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="n"><span class="pre">bool</span></span><span class="w"> </span><span class="o"><span class="pre">=</span></span><span class="w"> </span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">experiment_id</span></span><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="n"><span class="pre">int</span></span><span class="w"> </span><span class="o"><span class="pre">=</span></span><span class="w"> </span><span class="default_value"><span class="pre">'average'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">bin_size</span></span><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="n"><span class="pre">Optional</span><span class="p"><span class="pre">[</span></span><span class="pre">Union</span><span class="p"><span class="pre">[</span></span><span class="pre">int</span><span class="p"><span class="pre">,</span></span><span class="w"> </span><span class="pre">str</span><span class="p"><span class="pre">]</span></span><span class="p"><span class="pre">]</span></span></span><span class="w"> </span><span class="o"><span class="pre">=</span></span><span class="w"> </span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">bin_index</span></span><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="n"><span class="pre">Union</span><span class="p"><span class="pre">[</span></span><span class="pre">int</span><span class="p"><span class="pre">,</span></span><span class="w"> </span><span class="pre">str</span><span class="p"><span class="pre">]</span></span></span><span class="w"> </span><span class="o"><span class="pre">=</span></span><span class="w"> </span><span class="default_value"><span class="pre">0</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">dpi</span></span><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="n"><span class="pre">int</span></span><span class="w"> </span><span class="o"><span class="pre">=</span></span><span class="w"> </span><span class="default_value"><span class="pre">100</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">ax</span></span><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="n"><span class="pre">Optional</span><span class="p"><span class="pre">[</span></span><span class="pre">Any</span><span class="p"><span class="pre">]</span></span></span><span class="w"> </span><span class="o"><span class="pre">=</span></span><span class="w"> </span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">show</span></span><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="n"><span class="pre">bool</span></span><span class="w"> </span><span class="o"><span class="pre">=</span></span><span class="w"> </span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span> <span class="sig-return"><span class="sig-return-icon">→</span> <span class="sig-return-typehint"><span class="pre">figure</span></span></span><a class="headerlink" href="#deepof.visuals.plot_heatmaps" title="Permalink to this definition"></a></dt>
<dd><p>Plot heatmaps of the specified body parts (bodyparts) of the specified animal (i).</p>
<dl class="field-list simple">
<dt class="field-odd">Parameters<span class="colon">:</span></dt>
<dd class="field-odd"><ul class="simple">
<li><p><strong>coordinates</strong> (<em>coordinates</em>) – deepof Coordinates object.</p></li>
<li><p><strong>bodyparts</strong> (<em>list</em>) – list of body parts to plot.</p></li>
<li><p><strong>center</strong> (<em>str</em>) – Name of the body part to which the positions will be centered. If false, the raw data is returned; if ‘arena’ (default), coordinates are centered in the pitch.</p></li>
<li><p><strong>align</strong> (<em>str</em>) – Selects the body part to which later processes will align the frames with (see preprocess in table_dict documentation).</p></li>
<li><p><strong>exp_condition</strong> (<em>str</em>) – Experimental condition to plot base filters on.</p></li>
<li><p><strong>condition_value</strong> (<em>str</em>) – Experimental condition value to plot. If available, it filters the experiments to keep only those whose condition value matches the given string in the provided exp_condition.</p></li>
<li><p><strong>display_arena</strong> (<em>bool</em>) – whether to plot a dashed line with an overlying arena perimeter. Defaults to True.</p></li>
<li><p><strong>xlim</strong> (<em>float</em>) – x-axis limits.</p></li>
<li><p><strong>ylim</strong> (<em>float</em>) – y-axis limits.</p></li>
<li><p><strong>save</strong> (<em>str</em>) – if provided, the figure is saved to the specified path.</p></li>
<li><p><strong>experiment_id</strong> (<em>str</em>) – index of the animal to plot.</p></li>
<li><p><strong>bin_size</strong> (<em>Union</em><em>[</em><em>int</em><em>,</em><em>str</em><em>]</em>) – bin size for time filtering.</p></li>
<li><p><strong>bin_index</strong> (<em>Union</em><em>[</em><em>int</em><em>,</em><em>str</em><em>]</em>) – index of the bin of size bin_size to select along the time dimension. Denotes exact start position in the time domain if given as string.</p></li>
<li><p><strong>dpi</strong> (<em>int</em>) – resolution of the figure.</p></li>
<li><p><strong>ax</strong> (<em>plt.AxesSubplot</em>) – axes where to plot the current figure. If not provided, a new figure will be created.</p></li>
<li><p><strong>show</strong> (<em>bool</em>) – whether to show the created figure. If False, returns al axes.</p></li>
</ul>
</dd>
<dt class="field-even">Returns<span class="colon">:</span></dt>
<dd class="field-even"><p>figure with the specified characteristics</p>
</dd>
<dt class="field-odd">Return type<span class="colon">:</span></dt>
<dd class="field-odd"><p>heatmaps (plt.figure)</p>
</dd>
</dl>
</dd></dl>
</section>
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