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matteoferla/Fragmenstein

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fragmenstein/igor/_igor_utils.py

Summary

Maintainability
A
3 hrs
Test Coverage

Function per_atom_scores has a Cognitive Complexity of 18 (exceeds 5 allowed). Consider refactoring.
Open

    def per_atom_scores(self,
                        pose: Optional[pyrosetta.Pose]=None,
                        target_res: Optional[int]=None,
                        scorefxn: Optional[pyrosetta.ScoreFunction]=None) -> Dict[str, Dict[str, float]]:
        """
Severity: Minor
Found in fragmenstein/igor/_igor_utils.py - About 2 hrs to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function display_energy has a Cognitive Complexity of 9 (exceeds 5 allowed). Consider refactoring.
Open

    def display_energy(self,
                       minimized_mol: Union[Chem.Mol, None],
                       term: Union[str, Enum]='all',
                       scorefxn: Optional[pyrosetta.ScoreFunction]=None,
                       colorMap:str='coolwarm') -> Dict[str, float]:
Severity: Minor
Found in fragmenstein/igor/_igor_utils.py - About 55 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function relax_with_ED has 5 arguments (exceeds 4 allowed). Consider refactoring.
Open

    def relax_with_ED(cls, pose,
Severity: Minor
Found in fragmenstein/igor/_igor_utils.py - About 35 mins to fix

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