File unmerge_mapper.py has 393 lines of code (exceeds 250 allowed). Consider refactoring. Open
########################################################################################################################
__doc__ = \
"""
Unmerge mapper (not inherited) but inherits `positional_mapping.GPM`Function get_possible_map has a Cognitive Complexity of 19 (exceeds 5 allowed). Consider refactoring. Open
def get_possible_map(self,
other: Chem.Mol,
label: str,
o_map: Dict[int, int], # followup -> other
inter_map: Dict[int, int], # other -> combined- Read upRead up
Cognitive Complexity
Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.
A method's cognitive complexity is based on a few simple rules:
- Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
- Code is considered more complex for each "break in the linear flow of the code"
- Code is considered more complex when "flow breaking structures are nested"
Further reading
Function calculate has a Cognitive Complexity of 15 (exceeds 5 allowed). Consider refactoring. Open
def calculate(self, accounted_for: set):
"""perform the calculations"""
# ---- sorters --------------------
goodness_sorter = self.goodness_sorter_factory(3)- Read upRead up
Cognitive Complexity
Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.
A method's cognitive complexity is based on a few simple rules:
- Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
- Code is considered more complex for each "break in the linear flow of the code"
- Code is considered more complex when "flow breaking structures are nested"
Further reading
Function check_possible_distances has a Cognitive Complexity of 13 (exceeds 5 allowed). Consider refactoring. Open
def check_possible_distances(self, other, possible_map, combined, combined_map, cutoff=2.5):
for i, offset_o in possible_map.items():
unoffset_o = offset_o - combined.GetNumAtoms()
atom = self.followup.GetAtomWithIdx(i)
for neigh in atom.GetNeighbors():- Read upRead up
Cognitive Complexity
Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.
A method's cognitive complexity is based on a few simple rules:
- Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
- Code is considered more complex for each "break in the linear flow of the code"
- Code is considered more complex when "flow breaking structures are nested"
Further reading
Function bond has a Cognitive Complexity of 12 (exceeds 5 allowed). Consider refactoring. Open
def bond(self, idx: Optional[int] = None) -> Chem.Mol:
"""
Add bonds. As in the verb 'to bond' ...
"""
if idx is None:- Read upRead up
Cognitive Complexity
Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.
A method's cognitive complexity is based on a few simple rules:
- Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
- Code is considered more complex for each "break in the linear flow of the code"
- Code is considered more complex when "flow breaking structures are nested"
Further reading
Function make_maps has a Cognitive Complexity of 10 (exceeds 5 allowed). Consider refactoring. Open
def make_maps(cls, target: Chem.Mol, mols: List[Chem.Mol], mode: Optional[Dict[str, Any]] = None) \
-> Dict[str, List[Dict[int, int]]]:
"""
This is basically if someone is using this class outside of Monster
- Read upRead up
Cognitive Complexity
Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.
A method's cognitive complexity is based on a few simple rules:
- Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
- Code is considered more complex for each "break in the linear flow of the code"
- Code is considered more complex when "flow breaking structures are nested"
Further reading
Function get_possible_map has 8 arguments (exceeds 4 allowed). Consider refactoring. Open
def get_possible_map(self,Function judge_n_move_on has 6 arguments (exceeds 4 allowed). Consider refactoring. Open
def judge_n_move_on(self, combined, combined_map, other, possible_map, others, disregarded):Function check_possible_distances has 5 arguments (exceeds 4 allowed). Consider refactoring. Open
def check_possible_distances(self, other, possible_map, combined, combined_map, cutoff=2.5):Function unmerge_inner has a Cognitive Complexity of 7 (exceeds 5 allowed). Consider refactoring. Open
def unmerge_inner(self,
combined: Chem.Mol,
combined_map: Dict[int, int],
others: List[Chem.Mol],
disregarded: List[Chem.Mol]) -> None:- Read upRead up
Cognitive Complexity
Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.
A method's cognitive complexity is based on a few simple rules:
- Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
- Code is considered more complex for each "break in the linear flow of the code"
- Code is considered more complex when "flow breaking structures are nested"
Further reading
Function measure_map has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring. Open
def measure_map(self, mol: Chem.Mol, mapping: Dict[int, int]) -> np.array:
"""
Returns a vector with the distances but not of length len(mapping)
This used by offness to score how bad the mapping is
- Read upRead up
Cognitive Complexity
Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.
A method's cognitive complexity is based on a few simple rules:
- Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
- Code is considered more complex for each "break in the linear flow of the code"
- Code is considered more complex when "flow breaking structures are nested"