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matteoferla/Fragmenstein

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fragmenstein/mpro/__init__.py

Summary

Maintainability
A
1 hr
Test Coverage

Function from_postera_row has a Cognitive Complexity of 7 (exceeds 5 allowed). Consider refactoring.
Open

    def from_postera_row(cls, row: pd.Series, results:Optional=None):
        if row.fragments == 'x0072' or str(row.fragments) == 'nan':
            # these are not hit inspired.
            cls.journal.error(f'No valid parent hits for {row.CID}.')
            return None
Severity: Minor
Found in fragmenstein/mpro/__init__.py - About 35 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Avoid too many return statements within this function.
Open

            return cls.from_hit_codes(hit_codes=row.fragments.split(','),
Severity: Major
Found in fragmenstein/mpro/__init__.py - About 30 mins to fix

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