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migraf/fhir-kindling

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fhir_kindling/generators/dataset.py

Summary

Maintainability
D
2 days
Test Coverage

File dataset.py has 457 lines of code (exceeds 250 allowed). Consider refactoring.
Open

import random
from typing import Dict, List, Optional, Type, Union
from uuid import uuid4

import matplotlib.pyplot as plt
Severity: Minor
Found in fhir_kindling/generators/dataset.py - About 7 hrs to fix

    Function _get_required_reference has a Cognitive Complexity of 17 (exceeds 5 allowed). Consider refactoring.
    Open

        def _get_required_reference(
        resource: Union[FHIRResourceModel, Type[FHIRAbstractModel]]
    ) -> str:
        fields = get_resource_fields(resource)
        required_fields = []
    Severity: Minor
    Found in fhir_kindling/generators/dataset.py - About 2 hrs to fix

    Cognitive Complexity

    Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

    A method's cognitive complexity is based on a few simple rules:

    • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
    • Code is considered more complex for each "break in the linear flow of the code"
    • Code is considered more complex when "flow breaking structures are nested"

    Further reading

    DatasetGenerator has 21 functions (exceeds 20 allowed). Consider refactoring.
    Open

    class DatasetGenerator:

    """
    Generates a dataset of FHIR resources.
    """
    Severity: Minor
    Found in fhir_kindling/generators/dataset.py - About 2 hrs to fix

      Function _validate_depends has a Cognitive Complexity of 14 (exceeds 5 allowed). Consider refactoring.
      Open

          def _validate_depends(
        self,
        depends_on: Union[str, List[str]],
    ):
        graph = self.graph()
      Severity: Minor
      Found in fhir_kindling/generators/dataset.py - About 1 hr to fix

      Cognitive Complexity

      Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

      A method's cognitive complexity is based on a few simple rules:

      • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
      • Code is considered more complex for each "break in the linear flow of the code"
      • Code is considered more complex when "flow breaking structures are nested"

      Further reading

      Function _get_refs_for_generator has a Cognitive Complexity of 13 (exceeds 5 allowed). Consider refactoring.
      Open

          def _get_refs_for_generator(
        self, generator: DataSetResourceGenerator, result: dict
    ) -> dict:
        """Get the references resources for a generator from the results and insert a reference to them into
        the reference field of the generator
      Severity: Minor
      Found in fhir_kindling/generators/dataset.py - About 1 hr to fix

      Cognitive Complexity

      Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

      A method's cognitive complexity is based on a few simple rules:

      • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
      • Code is considered more complex for each "break in the linear flow of the code"
      • Code is considered more complex when "flow breaking structures are nested"

      Further reading

      Function _add_generator_to_graph has a Cognitive Complexity of 12 (exceeds 5 allowed). Consider refactoring.
      Open

          def _add_generator_to_graph(self, generator: DataSetResourceGenerator):
        self._graph.add_node(generator.name, generator=generator)
        if generator.depends_on:
            if isinstance(generator.depends_on, str):
                self._graph.add_edge(
      Severity: Minor
      Found in fhir_kindling/generators/dataset.py - About 1 hr to fix

      Cognitive Complexity

      Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

      A method's cognitive complexity is based on a few simple rules:

      • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
      • Code is considered more complex for each "break in the linear flow of the code"
      • Code is considered more complex when "flow breaking structures are nested"

      Further reading

      Function _generate_time_series has a Cognitive Complexity of 12 (exceeds 5 allowed). Consider refactoring.
      Open

          def _generate_time_series(self):
        resources = self.generator.generate(generate_ids=True, as_dict=True)
        if self.references:
            # insert the references
            for r in resources:
      Severity: Minor
      Found in fhir_kindling/generators/dataset.py - About 1 hr to fix

      Cognitive Complexity

      Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

      A method's cognitive complexity is based on a few simple rules:

      • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
      • Code is considered more complex for each "break in the linear flow of the code"
      • Code is considered more complex when "flow breaking structures are nested"

      Further reading

      Function _validate_depends_and_reference has a Cognitive Complexity of 10 (exceeds 5 allowed). Consider refactoring.
      Open

          def _validate_depends_and_reference(
        self,
        depends_on: Union[str, List[str]],
        reference_field: Union[str, List[str], None],
    ):
      Severity: Minor
      Found in fhir_kindling/generators/dataset.py - About 1 hr to fix

      Cognitive Complexity

      Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

      A method's cognitive complexity is based on a few simple rules:

      • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
      • Code is considered more complex for each "break in the linear flow of the code"
      • Code is considered more complex when "flow breaking structures are nested"

      Further reading

      Function generate has a Cognitive Complexity of 10 (exceeds 5 allowed). Consider refactoring.
      Open

          def generate(self, display: bool = False) -> DataSet:
        """
        Generate a dataset of FHIR resources according to the given conditions

        Args:
      Severity: Minor
      Found in fhir_kindling/generators/dataset.py - About 1 hr to fix

      Cognitive Complexity

      Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

      A method's cognitive complexity is based on a few simple rules:

      • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
      • Code is considered more complex for each "break in the linear flow of the code"
      • Code is considered more complex when "flow breaking structures are nested"

      Further reading

      Function __init__ has 5 arguments (exceeds 4 allowed). Consider refactoring.
      Open

          def __init__(
      Severity: Minor
      Found in fhir_kindling/generators/dataset.py - About 35 mins to fix

        Function add_resource_generator has 5 arguments (exceeds 4 allowed). Consider refactoring.
        Open

            def add_resource_generator(
        Severity: Minor
        Found in fhir_kindling/generators/dataset.py - About 35 mins to fix

          Function generate has a Cognitive Complexity of 7 (exceeds 5 allowed). Consider refactoring.
          Open

              def generate(self):
        # generate based on the likelihood
        if self.likelihood < 1.0:
            if random.random() > self.likelihood:
                return None
          Severity: Minor
          Found in fhir_kindling/generators/dataset.py - About 35 mins to fix

          Cognitive Complexity

          Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

          A method's cognitive complexity is based on a few simple rules:

          • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
          • Code is considered more complex for each "break in the linear flow of the code"
          • Code is considered more complex when "flow breaking structures are nested"

          Further reading

          Function add_resource_generator has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
          Open

              def add_resource_generator(
        self,
        resource_generator: BaseGenerator,
        name: str,
        depends_on: Union[str, List[str]] = "base",
          Severity: Minor
          Found in fhir_kindling/generators/dataset.py - About 25 mins to fix

          Cognitive Complexity

          Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

          A method's cognitive complexity is based on a few simple rules:

          • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
          • Code is considered more complex for each "break in the linear flow of the code"
          • Code is considered more complex when "flow breaking structures are nested"

          Further reading

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