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Function __getitem__ has a Cognitive Complexity of 7 (exceeds 5 allowed). Consider refactoring.
Open

    def __getitem__(self, idx: int) -> Tuple[np.ndarray, np.ndarray]:
        """Return batch corresponding to given index.

        Parameters
        ---------------
Severity: Minor
Found in embiggen/sequences/tensorflow_sequences/gcn_edge_prediction_training_sequence.py - About 35 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function graph_to_sparse_tensor has a Cognitive Complexity of 7 (exceeds 5 allowed). Consider refactoring.
Open

def graph_to_sparse_tensor(
    graph: Graph,
    kernel: str,
    handling_multi_graph: str = "warn",
) -> tf.SparseTensor:
Severity: Minor
Found in embiggen/utils/abstract_gcn.py - About 35 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function validate_torch_device has a Cognitive Complexity of 7 (exceeds 5 allowed). Consider refactoring.
Open

def validate_torch_device(device: str) -> str:
    """Validate and sanitize torch device name.
    
    Parameters
    ------------------------
Severity: Minor
Found in embiggen/utils/pytorch_utils.py - About 35 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function _get_model_training_input has a Cognitive Complexity of 7 (exceeds 5 allowed). Consider refactoring.
Open

    def _get_model_training_input(
        self,
        graph: Graph,
        support: Graph,
        node_features: Optional[List[np.ndarray]],
Severity: Minor
Found in embiggen/node_label_prediction/node_label_prediction_tensorflow/gcn.py - About 35 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function embed_graph has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

def embed_graph(
    graph: Union[Graph, str],
    embedding_model: Union[str, Type[AbstractEmbeddingModel]],
    repository: Optional[str] = None,
    version: Optional[str] = None,
Severity: Minor
Found in embiggen/embedders/graph_embedding_pipeline.py - About 25 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function convert_networkx_graph_to_ensmallen_graph has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

def convert_networkx_graph_to_ensmallen_graph(
    graph: nx.Graph
) -> Graph:
    """Return Ensmallen Graph derived from the provided NetworkX Graph.
Severity: Minor
Found in embiggen/utils/networkx_utils.py - About 25 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function format_list has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

def format_list(
    words: List[str],
    bold_words: bool = False
) -> str:
    """Returns formatted list with Oxford comma.
Severity: Minor
Found in embiggen/utils/abstract_models/list_formatting.py - About 25 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function get_heatmaps_comments has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

    def get_heatmaps_comments(self, letters: Optional[List[str]] = None) -> str:
        """Returns description of the heatmaps for the provided letters."""
        if (
            not self._show_heatmaps_description
            or letters is not None
Severity: Minor
Found in embiggen/visualizations/graph_visualizer.py - About 25 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function _cached_fit_transform has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

    def _cached_fit_transform(
        self,
        graph: Graph,
        return_dataframe: bool = True,
    ) -> EmbeddingResult:
Severity: Minor
Found in embiggen/utils/abstract_models/abstract_embedding_model.py - About 25 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

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