neuropsychology/NeuroKit.py

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neurokit/statistics/routines.py

Summary

Maintainability
D
2 days
Test Coverage

Function compute_BMI has a Cognitive Complexity of 42 (exceeds 5 allowed). Consider refactoring.
Open

def compute_BMI(height, weight, age, sex):
    """
    Returns the traditional BMI, the 'new' Body Mass Index and estimates the Body Fat Percentage (BFP; Deurenberg et al., 1991).

    Parameters
Severity: Minor
Found in neurokit/statistics/routines.py - About 6 hrs to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

File routines.py has 355 lines of code (exceeds 250 allowed). Consider refactoring.
Open

# -*- coding: utf-8 -*-
from __future__ import division
from .statistics import normal_range
from .statistics import find_following_duplicates
from .statistics import find_closest_in_list
Severity: Minor
Found in neurokit/statistics/routines.py - About 4 hrs to fix

    Function predict_next_value has a Cognitive Complexity of 13 (exceeds 5 allowed). Consider refactoring.
    Open

        def predict_next_value(self):
            if len(self.burn) > 0:
                value = np.random.choice(self.burn)
                self.burn.remove(value)
                self.next_value = value
    Severity: Minor
    Found in neurokit/statistics/routines.py - About 1 hr to fix

    Cognitive Complexity

    Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

    A method's cognitive complexity is based on a few simple rules:

    • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
    • Code is considered more complex for each "break in the linear flow of the code"
    • Code is considered more complex when "flow breaking structures are nested"

    Further reading

    Function __init__ has 6 arguments (exceeds 4 allowed). Consider refactoring.
    Open

        def __init__(self, signal=[0, 100], treshold=0.50, burn=5, stop_n_inversions=False, prior_signal=[], prior_response=[]):
    Severity: Minor
    Found in neurokit/statistics/routines.py - About 45 mins to fix

      Similar blocks of code found in 2 locations. Consider refactoring.
      Open

          a = 1/2+((hit_rate-fa_rate)*(1+hit_rate-fa_rate) / (4*hit_rate*(1-fa_rate)))
      Severity: Major
      Found in neurokit/statistics/routines.py and 1 other location - About 1 hr to fix
      neurokit/statistics/routines.py on lines 103..103

      Duplicated Code

      Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

      Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

      When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

      Tuning

      This issue has a mass of 49.

      We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

      The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

      If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

      See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

      Refactorings

      Further Reading

      Similar blocks of code found in 2 locations. Consider refactoring.
      Open

          b = 1/2-((fa_rate-hit_rate)*(1+fa_rate-hit_rate) / (4*fa_rate*(1-hit_rate)))
      Severity: Major
      Found in neurokit/statistics/routines.py and 1 other location - About 1 hr to fix
      neurokit/statistics/routines.py on lines 102..102

      Duplicated Code

      Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

      Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

      When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

      Tuning

      This issue has a mass of 49.

      We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

      The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

      If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

      See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

      Refactorings

      Further Reading

      Similar blocks of code found in 2 locations. Consider refactoring.
      Open

          hit_rate_adjusted = (n_Hit+ 0.5)/((n_Hit+ 0.5) + n_Miss + 1)
      Severity: Minor
      Found in neurokit/statistics/routines.py and 1 other location - About 45 mins to fix
      neurokit/statistics/routines.py on lines 90..90

      Duplicated Code

      Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

      Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

      When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

      Tuning

      This issue has a mass of 35.

      We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

      The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

      If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

      See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

      Refactorings

      Further Reading

      Similar blocks of code found in 2 locations. Consider refactoring.
      Open

          fa_rate_adjusted = (n_FA+ 0.5)/((n_FA+ 0.5) + n_CR + 1)
      Severity: Minor
      Found in neurokit/statistics/routines.py and 1 other location - About 45 mins to fix
      neurokit/statistics/routines.py on lines 89..89

      Duplicated Code

      Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

      Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

      When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

      Tuning

      This issue has a mass of 35.

      We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

      The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

      If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

      See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

      Refactorings

      Further Reading

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