ontohub/ontohub

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Avoid too many return statements within this method.
Open

      return true if perm.role == 'owner' and role == :editor
Severity: Major
Found in lib/permissionable.rb - About 30 mins to fix

    Similar blocks of code found in 2 locations. Consider refactoring.
    Open

      def skip_all_callbacks(klass)
        [:validation, :save, :create, :commit].each do |name|
          klass.send("_#{name}_callbacks").each do |_callback|
            if _callback.filter != :enhanced_write_lobs
              klass.skip_callback(name, _callback.kind, _callback.filter)
    Severity: Minor
    Found in lib/migration_with_data.rb and 1 other location - About 25 mins to fix
    lib/migration_with_data.rb on lines 56..60

    Duplicated Code

    Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

    Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

    When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

    Tuning

    This issue has a mass of 31.

    We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

    The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

    If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

    See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

    Refactorings

    Further Reading

    Identical blocks of code found in 2 locations. Consider refactoring.
    Open

          when SYMBOL
            @current_symbol = Hash[*[attributes]]
            @current_symbol['text'] = ''
            if @current_mapping && @current_mapping['map']
              @current_mapping['map'] << @current_symbol
    Severity: Minor
    Found in lib/ontology_parser.rb and 1 other location - About 25 mins to fix
    lib/hets/dg/nokogiri_listener.rb on lines 58..64

    Duplicated Code

    Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

    Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

    When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

    Tuning

    This issue has a mass of 31.

    We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

    The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

    If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

    See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

    Refactorings

    Further Reading

    Identical blocks of code found in 2 locations. Consider refactoring.
    Open

            when SYMBOL
              @current_symbol = Hash[*[attributes]]
              @current_symbol['text'] = ''
              if @current_mapping && @current_mapping['map']
                @current_mapping['map'] << @current_symbol
    Severity: Minor
    Found in lib/hets/dg/nokogiri_listener.rb and 1 other location - About 25 mins to fix
    lib/ontology_parser.rb on lines 52..58

    Duplicated Code

    Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

    Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

    When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

    Tuning

    This issue has a mass of 31.

    We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

    The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

    If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

    See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

    Refactorings

    Further Reading

    Similar blocks of code found in 2 locations. Consider refactoring.
    Open

      def set_all_callbacks(klass)
        [:validation, :save, :create, :commit].each do |name|
          klass.send("_#{name}_callbacks").each do |_callback|
            if _callback.filter != :enhanced_write_lobs
              klass.set_callback(name, _callback.kind, _callback.filter)
    Severity: Minor
    Found in lib/migration_with_data.rb and 1 other location - About 25 mins to fix
    lib/migration_with_data.rb on lines 46..50

    Duplicated Code

    Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

    Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

    When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

    Tuning

    This issue has a mass of 31.

    We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

    The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

    If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

    See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

    Refactorings

    Further Reading

    Method assign_path_parameters has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
    Open

      def assign_path_parameters(request, element)
        ontology = element.is_a?(Ontology) ? element : element.ontology
    
        proof_attempt = element.proof_attempt if @map[:proof_attempt]
        theorem = element.theorem if @map[:theorem]
    Severity: Minor
    Found in lib/router_constraints.rb - About 25 mins to fix

    Cognitive Complexity

    Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

    A method's cognitive complexity is based on a few simple rules:

    • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
    • Code is considered more complex for each "break in the linear flow of the code"
    • Code is considered more complex when "flow breaking structures are nested"

    Further reading

    Method theorem has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
    Open

          def theorem(current_element)
            if logic_callback.pre_theorem(current_element)
              theorem = ontology.theorems.update_or_create_from_hash(
                current_element, importer.now)
              ontology.theorems_count += 1
    Severity: Minor
    Found in lib/hets/dg/node_evaluator.rb - About 25 mins to fix

    Cognitive Complexity

    Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

    A method's cognitive complexity is based on a few simple rules:

    • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
    • Code is considered more complex for each "break in the linear flow of the code"
    • Code is considered more complex when "flow breaking structures are nested"

    Further reading

    Method imported_axiom has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
    Open

          def imported_axiom(current_element)
            if logic_callback.pre_axiom(current_element)
              current_element['imported'] = true
              axiom = ontology.axioms.update_or_create_from_hash(
                current_element, importer.now)
    Severity: Minor
    Found in lib/hets/dg/node_evaluator.rb - About 25 mins to fix

    Cognitive Complexity

    Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

    A method's cognitive complexity is based on a few simple rules:

    • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
    • Code is considered more complex for each "break in the linear flow of the code"
    • Code is considered more complex when "flow breaking structures are nested"

    Further reading

    Method build_api_uri has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
    Open

        def build_api_uri(command, arguments = [], query_string = {})
          hierarchy = [hets_instance.uri, command, *arguments].join('/')
          query_part =
            if query_string && !query_string.empty?
              query_string.reduce('?') do |str, (key, val)|
    Severity: Minor
    Found in lib/hets/caller.rb - About 25 mins to fix

    Cognitive Complexity

    Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

    A method's cognitive complexity is based on a few simple rules:

    • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
    • Code is considered more complex for each "break in the linear flow of the code"
    • Code is considered more complex when "flow breaking structures are nested"

    Further reading

    Method perform has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
    Open

      def perform(version_with_options_queue)
        return if version_with_options_queue.empty?
        initialize_data(version_with_options_queue)
    
        timeout_job_id = ::TimeoutWorker.start_timeout_clock(@version_id)
    Severity: Minor
    Found in lib/ontology_parsing_worker.rb - About 25 mins to fix

    Cognitive Complexity

    Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

    A method's cognitive complexity is based on a few simple rules:

    • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
    • Code is considered more complex for each "break in the linear flow of the code"
    • Code is considered more complex when "flow breaking structures are nested"

    Further reading

    Method get_object has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
    Open

      def get_object(rugged_commit, object_path='')
        object = rugged_commit.tree
        object_path.split('/').each do |part|
          return nil unless object[part]
          object = @repo.lookup(object[part][:oid]) unless part.empty?
    Severity: Minor
    Found in lib/git_repository/get_object.rb - About 25 mins to fix

    Cognitive Complexity

    Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

    A method's cognitive complexity is based on a few simple rules:

    • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
    • Code is considered more complex for each "break in the linear flow of the code"
    • Code is considered more complex when "flow breaking structures are nested"

    Further reading

    Method suspended_save_ontologies has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
    Open

      def suspended_save_ontologies(options={})
        versions = []
        commits_count = 0
        highest_change_file_count = 0
        user = options.delete(:user)
    Severity: Minor
    Found in lib/ontology_saver.rb - About 25 mins to fix

    Cognitive Complexity

    Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

    A method's cognitive complexity is based on a few simple rules:

    • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
    • Code is considered more complex for each "break in the linear flow of the code"
    • Code is considered more complex when "flow breaking structures are nested"

    Further reading

    Method path_exists? has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
    Open

      def path_exists?(path, commit_oid = nil)
        return true if path == '/' || path.empty?
        return false if empty?
        rugged_commit = get_commit(commit_oid)
        if !rugged_commit && path.empty?
    Severity: Minor
    Found in lib/git_repository.rb - About 25 mins to fix

    Cognitive Complexity

    Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

    A method's cognitive complexity is based on a few simple rules:

    • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
    • Code is considered more complex for each "break in the linear flow of the code"
    • Code is considered more complex when "flow breaking structures are nested"

    Further reading

    Method in_process has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
    Open

        def self.in_process(user=nil)
          return [] if user.nil?
          state = "done"
          stmt = ['state != ?', state] if user == true
          if user.is_a?(User)
    Severity: Minor
    Found in app/models/ontology/versions.rb - About 25 mins to fix

    Cognitive Complexity

    Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

    A method's cognitive complexity is based on a few simple rules:

    • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
    • Code is considered more complex for each "break in the linear flow of the code"
    • Code is considered more complex when "flow breaking structures are nested"

    Further reading

    Method process_used_axioms has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
    Open

          def process_used_axioms(proof_info, proof_attempt)
            used_axioms = []
            used_theorems = []
            generated_axioms = []
            proof_info[:used_axioms].each do |axiom_name|
    Severity: Minor
    Found in lib/hets/prove/prove_evaluation_helper.rb - About 25 mins to fix

    Cognitive Complexity

    Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

    A method's cognitive complexity is based on a few simple rules:

    • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
    • Code is considered more complex for each "break in the linear flow of the code"
    • Code is considered more complex when "flow breaking structures are nested"

    Further reading

    Method mapping has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
    Open

          def mapping(current_element)
            if logic_callback.pre_mapping(current_element)
              alias_iris_for_mappings!(current_element)
              mapping = parent_ontology.mappings.update_or_create_from_hash(
                current_element, user, importer.now)
    Severity: Minor
    Found in lib/hets/dg/node_evaluator.rb - About 25 mins to fix

    Cognitive Complexity

    Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

    A method's cognitive complexity is based on a few simple rules:

    • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
    • Code is considered more complex for each "break in the linear flow of the code"
    • Code is considered more complex when "flow breaking structures are nested"

    Further reading

    Method symbol has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
    Open

          def symbol(current_element)
            if logic_callback.pre_symbol(current_element)
              symbol = ontology.symbols.update_or_create_from_hash(
                current_element, importer.now)
              ontology.symbols_count += 1
    Severity: Minor
    Found in lib/hets/dg/node_evaluator.rb - About 25 mins to fix

    Cognitive Complexity

    Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

    A method's cognitive complexity is based on a few simple rules:

    • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
    • Code is considered more complex for each "break in the linear flow of the code"
    • Code is considered more complex when "flow breaking structures are nested"

    Further reading

    Method check_read_permissions has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
    Open

      def check_read_permissions
        unless params[:action] == 'index'
          authorize! :show, resource.source.repository if resource.source
          authorize! :show, resource.target.repository if resource.target
        end
    Severity: Minor
    Found in app/controllers/mappings_controller.rb - About 25 mins to fix

    Cognitive Complexity

    Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

    A method's cognitive complexity is based on a few simple rules:

    • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
    • Code is considered more complex for each "break in the linear flow of the code"
    • Code is considered more complex when "flow breaking structures are nested"

    Further reading

    Method commit_raw_file has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
    Open

      def commit_raw_file
        return true if ontology.parent
        raise "raw file missing" unless @raw_file
        self.path = @raw_file.original_filename if self.path.nil?
        # otherwise the file upload is broken (no implicit conversion of ActionDispatch::Http::UploadedFile into String):
    Severity: Minor
    Found in app/models/ontology_version/files.rb - About 25 mins to fix

    Cognitive Complexity

    Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

    A method's cognitive complexity is based on a few simple rules:

    • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
    • Code is considered more complex for each "break in the linear flow of the code"
    • Code is considered more complex when "flow breaking structures are nested"

    Further reading

    Method import_remote has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
    Open

        def import_remote(type, user, source, name, params={})
          unless SOURCE_TYPES.include?(type)
            raise ArgumentError, "invalid source type: #{type}"
          end
          unless GitRepository.send "is_#{type}_repository?", source
    Severity: Minor
    Found in app/models/repository/importing.rb - About 25 mins to fix

    Cognitive Complexity

    Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

    A method's cognitive complexity is based on a few simple rules:

    • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
    • Code is considered more complex for each "break in the linear flow of the code"
    • Code is considered more complex when "flow breaking structures are nested"

    Further reading

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