lib/rubabel/molecule/fragmentable/asms_2002_scheme3-5.rb from princelab/msplinter

File `asms_2002_scheme3-5.rb` has 412 lines of code (exceeds 250 allowed). Consider refactoring.
Open

require_relative "../fragmentable"

#        self.write( 'root.svg', :add_atom_index => true)
module Rubabel
  class Molecule

Found in lib/rubabel/molecule/fragmentable/asms_2002_scheme3-5.rb - About 5 hrs to fix

Method `jasms_2002_5_e5_formaldehyde_loss` has 31 lines of code (exceeds 25 allowed). Consider refactoring.
Open

      ::Rule_names << def jasms_2002_5_e5_formaldehyde_loss(only_uniqs: true, fragment_adduct_state: :as_published)
        fragment_sets = []
        fragment = lambda do |*arr|
          # duplicate
          (nmol, (nitrogen, ring_carbon, lost_carbon, lost_oxygen, ring_carbon2)) = self.dup_molecule(arr)

Found in lib/rubabel/molecule/fragmentable/asms_2002_scheme3-5.rb - About 1 hr to fix

Method `jasms_2002_4_g2a_formaldehyde_loss` has 30 lines of code (exceeds 25 allowed). Consider refactoring.
Open

      ::Rule_names << def jasms_2002_4_g2a_formaldehyde_loss(only_uniqs: true, fragment_adduct_state: :as_published)
        fragment_sets = []
        fragment = lambda do |*arr|
          # duplicate
          (nmol, (ring_carbon, ring_oxygen, c3, link_carbon)) = self.dup_molecule(arr)

Found in lib/rubabel/molecule/fragmentable/asms_2002_scheme3-5.rb - About 1 hr to fix

Method `jasms_2002_5_e2_water_loss` has 29 lines of code (exceeds 25 allowed). Consider refactoring.
Open

      ::Rule_names << def jasms_2002_5_e2_water_loss(only_uniqs: true, fragment_adduct_state: :as_published)
        fragment_sets = []
        fragment = lambda do |*arr|
          # duplicate
          (nmol, (c1, alcohol_carbon, alcohol_oxygen, c3, c4, nitrogen)) = self.dup_molecule(arr)

Found in lib/rubabel/molecule/fragmentable/asms_2002_scheme3-5.rb - About 1 hr to fix

Method `jasms_2002_3_b2` has 29 lines of code (exceeds 25 allowed). Consider refactoring.
Open

      ::Rule_names << def jasms_2002_3_b2(only_uniqs: true, fragment_adduct_state: :as_published)
        fragment_sets = []
        fragment = lambda do |*arr|
          # duplicate
          (nmol, (alcc1, alco1, alcc2, alco2)) = self.dup_molecule(arr)

Found in lib/rubabel/molecule/fragmentable/asms_2002_scheme3-5.rb - About 1 hr to fix

Method `jasms_2002_4_g2a` has 28 lines of code (exceeds 25 allowed). Consider refactoring.
Open

      ::Rule_names << def jasms_2002_4_g2a(only_uniqs: true, fragment_adduct_state: :as_published)
        fragment_sets = []
        fragment = lambda do |*arr|
          # duplicate
          (nmol, (alcohol_oxygen, alcohol_carbon, acc1, aco1)) = self.dup_molecule(arr)

Found in lib/rubabel/molecule/fragmentable/asms_2002_scheme3-5.rb - About 1 hr to fix

Method `jasms_2002_5_e2` has 28 lines of code (exceeds 25 allowed). Consider refactoring.
Open

      ::Rule_names << def jasms_2002_5_e2(only_uniqs: true, fragment_adduct_state: :as_published)
        fragment_sets = []
        fragment = lambda do |*arr|
          # duplicate
          (nmol, (nitrogen, carbonyl, carbonyl_oxygen, c2)) = self.dup_molecule(arr)

Found in lib/rubabel/molecule/fragmentable/asms_2002_scheme3-5.rb - About 1 hr to fix

Method `jasms_2002_4_g1` has 28 lines of code (exceeds 25 allowed). Consider refactoring.
Open

      ::Rule_names << def jasms_2002_4_g1(only_uniqs: true, fragment_adduct_state: :as_published)
        fragment_sets = []
        fragment = lambda do |*arr|
          # duplicate
          (nmol, (alcohol_oxygen, alcohol_carbon, c1)) = self.dup_molecule(arr)

Found in lib/rubabel/molecule/fragmentable/asms_2002_scheme3-5.rb - About 1 hr to fix

Method `jasms_2002_3_b2_formaldehyde_loss` has 28 lines of code (exceeds 25 allowed). Consider refactoring.
Open

      ::Rule_names << def jasms_2002_3_b2_formaldehyde_loss(only_uniqs: true, fragment_adduct_state: :as_published)
        fragment_sets = []
        fragment = lambda do |*arr|
          # duplicate
          (nmol, (alcohol_oxygen, alcohol_carbon, link_carbon)) = self.dup_molecule(arr)

Found in lib/rubabel/molecule/fragmentable/asms_2002_scheme3-5.rb - About 1 hr to fix

Method `jasms_2002_3_b2_water_loss` has 28 lines of code (exceeds 25 allowed). Consider refactoring.
Open

      ::Rule_names << def jasms_2002_3_b2_water_loss(only_uniqs: true, fragment_adduct_state: :as_published)
        fragment_sets = []
        fragment = lambda do |*arr|
          # duplicate
          (nmol, (alcohol_oxygen, alcohol_carbon, nitrogen)) = self.dup_molecule(arr)

Found in lib/rubabel/molecule/fragmentable/asms_2002_scheme3-5.rb - About 1 hr to fix

Method `jasms_2002_5_e1_water_loss` has 28 lines of code (exceeds 25 allowed). Consider refactoring.
Open

      ::Rule_names << def jasms_2002_5_e1_water_loss(only_uniqs: true, fragment_adduct_state: :as_published)
        fragment_sets = []
        fragment = lambda do |*arr|
          # duplicate
          (nmol, (alcohol_carbon, alcohol_oxygen, attacked_carbon, lost_oxygen)) = self.dup_molecule(arr)

Found in lib/rubabel/molecule/fragmentable/asms_2002_scheme3-5.rb - About 1 hr to fix

Method `jasms_2002_3_b1` has 28 lines of code (exceeds 25 allowed). Consider refactoring.
Open

      ::Rule_names << def jasms_2002_3_b1(only_uniqs: true, fragment_adduct_state: :as_published)
        fragment_sets = []
        fragment = lambda do |*arr|
          # duplicate
          (nmol, (alcohol_oxygen, alcohol_carbon, link_carbon, nitrogen, carbonyl, carbonyl_oxygen)) = self.dup_molecule(arr)

Found in lib/rubabel/molecule/fragmentable/asms_2002_scheme3-5.rb - About 1 hr to fix

Method `jasms_2002_4_g2a_prime` has 28 lines of code (exceeds 25 allowed). Consider refactoring.
Open

      ::Rule_names << def jasms_2002_4_g2a_prime(only_uniqs: true, fragment_adduct_state: :as_published)
        fragment_sets = []
        fragment = lambda do |*arr|
          # duplicate
          (nmol, (alcohol_oxygen, alcohol_carbon, nitrogen)) = self.dup_molecule(arr)

Found in lib/rubabel/molecule/fragmentable/asms_2002_scheme3-5.rb - About 1 hr to fix

Method `jasms_2002_4_g2a_prime_water_loss` has 28 lines of code (exceeds 25 allowed). Consider refactoring.
Open

      ::Rule_names << def jasms_2002_4_g2a_prime_water_loss(only_uniqs: true, fragment_adduct_state: :as_published)
        fragment_sets = []
        fragment = lambda do |*arr|
          # duplicate
          (nmol, (alcohol_oxygen, alcohol_carbon, ring_carbon)) = self.dup_molecule(arr)

Found in lib/rubabel/molecule/fragmentable/asms_2002_scheme3-5.rb - About 1 hr to fix

Similar blocks of code found in 3 locations. Consider refactoring.
Open

      ::Rule_names << def jasms_2002_5_e5_formaldehyde_loss(only_uniqs: true, fragment_adduct_state: :as_published)
        fragment_sets = []
        fragment = lambda do |*arr|
          # duplicate
          (nmol, (nitrogen, ring_carbon, lost_carbon, lost_oxygen, ring_carbon2)) = self.dup_molecule(arr)

Found in lib/rubabel/molecule/fragmentable/asms_2002_scheme3-5.rb and 2 other locations - About 3 hrs to fix

Read up
Read up

lib/rubabel/molecule/fragmentable/asms_2002_scheme1.rb on lines 346..381

lib/rubabel/molecule/fragmentable/asms_2002_scheme2.rb on lines 190..224

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 136.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 122.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 122.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 121.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 121.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 121.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 120.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 120.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

princelab/msplinter

Summary

Maintainability

Test Coverage

File asms_2002_scheme3-5.rb has 412 lines of code (exceeds 250 allowed). Consider refactoring. Open

Method jasms_2002_5_e5_formaldehyde_loss has 31 lines of code (exceeds 25 allowed). Consider refactoring. Open

Method jasms_2002_4_g2a_formaldehyde_loss has 30 lines of code (exceeds 25 allowed). Consider refactoring. Open

Method jasms_2002_5_e2_water_loss has 29 lines of code (exceeds 25 allowed). Consider refactoring. Open

Method jasms_2002_3_b2 has 29 lines of code (exceeds 25 allowed). Consider refactoring. Open

Method jasms_2002_4_g2a has 28 lines of code (exceeds 25 allowed). Consider refactoring. Open

Method jasms_2002_5_e2 has 28 lines of code (exceeds 25 allowed). Consider refactoring. Open

Method jasms_2002_4_g1 has 28 lines of code (exceeds 25 allowed). Consider refactoring. Open

Method jasms_2002_3_b2_formaldehyde_loss has 28 lines of code (exceeds 25 allowed). Consider refactoring. Open

Method jasms_2002_3_b2_water_loss has 28 lines of code (exceeds 25 allowed). Consider refactoring. Open

Method jasms_2002_5_e1_water_loss has 28 lines of code (exceeds 25 allowed). Consider refactoring. Open

Method jasms_2002_3_b1 has 28 lines of code (exceeds 25 allowed). Consider refactoring. Open

Method jasms_2002_4_g2a_prime has 28 lines of code (exceeds 25 allowed). Consider refactoring. Open

Method jasms_2002_4_g2a_prime_water_loss has 28 lines of code (exceeds 25 allowed). Consider refactoring. Open

Similar blocks of code found in 3 locations. Consider refactoring. Open

Duplicated Code

Tuning

Refactorings

Further Reading

Similar blocks of code found in 3 locations. Consider refactoring. Open

Duplicated Code

Tuning

Refactorings

Further Reading

Similar blocks of code found in 3 locations. Consider refactoring. Open

Duplicated Code

Tuning

Refactorings

Further Reading

Similar blocks of code found in 4 locations. Consider refactoring. Open

Duplicated Code

Tuning

Refactorings

Further Reading

Similar blocks of code found in 4 locations. Consider refactoring. Open

Duplicated Code

Tuning

Refactorings

Further Reading

Similar blocks of code found in 4 locations. Consider refactoring. Open

Duplicated Code

Tuning

Refactorings

Further Reading

Similar blocks of code found in 3 locations. Consider refactoring. Open

Duplicated Code

Tuning

Refactorings

Further Reading

Similar blocks of code found in 3 locations. Consider refactoring. Open

Duplicated Code

Tuning

Refactorings

Further Reading

There are no issues that match your filters.

Category

Status

File `asms_2002_scheme3-5.rb` has 412 lines of code (exceeds 250 allowed). Consider refactoring.
Open

Method `jasms_2002_5_e5_formaldehyde_loss` has 31 lines of code (exceeds 25 allowed). Consider refactoring.
Open

Method `jasms_2002_4_g2a_formaldehyde_loss` has 30 lines of code (exceeds 25 allowed). Consider refactoring.
Open

Method `jasms_2002_5_e2_water_loss` has 29 lines of code (exceeds 25 allowed). Consider refactoring.
Open

Method `jasms_2002_3_b2` has 29 lines of code (exceeds 25 allowed). Consider refactoring.
Open

Method `jasms_2002_4_g2a` has 28 lines of code (exceeds 25 allowed). Consider refactoring.
Open

Method `jasms_2002_5_e2` has 28 lines of code (exceeds 25 allowed). Consider refactoring.
Open

Method `jasms_2002_4_g1` has 28 lines of code (exceeds 25 allowed). Consider refactoring.
Open

Method `jasms_2002_3_b2_formaldehyde_loss` has 28 lines of code (exceeds 25 allowed). Consider refactoring.
Open

Method `jasms_2002_3_b2_water_loss` has 28 lines of code (exceeds 25 allowed). Consider refactoring.
Open

Method `jasms_2002_5_e1_water_loss` has 28 lines of code (exceeds 25 allowed). Consider refactoring.
Open

Method `jasms_2002_3_b1` has 28 lines of code (exceeds 25 allowed). Consider refactoring.
Open

Method `jasms_2002_4_g2a_prime` has 28 lines of code (exceeds 25 allowed). Consider refactoring.
Open

Method `jasms_2002_4_g2a_prime_water_loss` has 28 lines of code (exceeds 25 allowed). Consider refactoring.
Open

Similar blocks of code found in 3 locations. Consider refactoring.
Open

Similar blocks of code found in 3 locations. Consider refactoring.
Open

Similar blocks of code found in 3 locations. Consider refactoring.
Open

Similar blocks of code found in 4 locations. Consider refactoring.
Open

Similar blocks of code found in 4 locations. Consider refactoring.
Open

Similar blocks of code found in 4 locations. Consider refactoring.
Open

Similar blocks of code found in 3 locations. Consider refactoring.
Open

Similar blocks of code found in 3 locations. Consider refactoring.
Open