| .codeclimate.yml | |
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| .coveragerc | |
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| .github/workflows/pythonpackage.yml | |
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| .gitignore | |
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| .pre-commit-config.yaml | |
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| LICENSE | |
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| README.rst | |
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| examples/seir_example.py | 25 | A 0 mins |
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| notebooks/demography.ipynb | |
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| notebooks/intro.ipynb | |
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| pydemic/__init__.py | 19 | A 0 mins |
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| pydemic/all.py | 37 | A 0 mins |
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| pydemic/api/__init__.py | 1 | A 0 mins |
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| pydemic/api/covid19.py | 174 | A 0 mins |
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| pydemic/cache.py | 137 | A 0 mins |
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| pydemic/cli/__init__.py | 0 | A 0 mins |
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| pydemic/cli/api.py | 45 | A 0 mins |
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| pydemic/cli/main.py | 31 | A 0 mins |
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| pydemic/clinical_models/__init__.py | 4 | A 0 mins |
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| pydemic/clinical_models/crude_FR.py | 48 | A 0 mins |
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| pydemic/clinical_models/hospitalization_with_delay.py | 40 | A 0 mins |
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| pydemic/clinical_models/hospitalization_with_overflow.py | 145 | A 0 mins |
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| pydemic/clinical_models/model.py | 193 | A 0 mins |
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| pydemic/clinical_models/utils.py | 40 | A 1 hr |
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| pydemic/config.py | 33 | A 0 mins |
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| pydemic/databases/diseases/covid-19/hospitalization-table-verity.csv | |
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| pydemic/databases/diseases/covid-19/mortality-table-verity.csv | |
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| pydemic/databases/diseases/covid-19/mortality-table-verity.txt | |
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| pydemic/databases/diseases/covid-19/parameters.xls | |
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| pydemic/databases/diseases/empty/hospitalization-table-default.csv | |
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| pydemic/databases/diseases/empty/mortality-table-default.csv | |
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| pydemic/db.py | 38 | A 0 mins |
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| pydemic/diseases/__init__.py | 35 | A 0 mins |
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| pydemic/diseases/covid19_class.py | 39 | A 0 mins |
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| pydemic/diseases/disease_class.py | 488 | A 35 mins |
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| pydemic/diseases/disease_params.py | 16 | A 0 mins |
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| pydemic/diseases/utils.py | 144 | A 0 mins |
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| pydemic/docs.py | 80 | A 0 mins |
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| pydemic/fitting/K.py | 131 | A 0 mins |
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| pydemic/fitting/R0.py | 85 | A 0 mins |
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| pydemic/fitting/Rt.py | 101 | A 0 mins |
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| pydemic/fitting/__init__.py | 19 | A 0 mins |
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| pydemic/fitting/epidemic_curves.py | 113 | A 0 mins |
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| pydemic/fitting/epidemic_curves_rt.py | 118 | C 7 hrs |
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| pydemic/fitting/exponential_growth.py | 134 | A 0 mins |
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| pydemic/fitting/seasonal.py | 20 | A 0 mins |
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| pydemic/fitting/smoothing.py | 54 | A 0 mins |
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| pydemic/fitting/time_dependent_growth.py | 44 | A 0 mins |
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| pydemic/fitting/utils.py | 53 | A 0 mins |
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| pydemic/formulas/__init__.py | 4 | A 0 mins |
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