reimandlab/Visualistion-Framework-for-Genome-Mutations

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NameLines of codeMaintainabilityTest coverage
website/data/ActivePathways/2021-01-06/AP_inherited_glycosylation.csv
website/data/ActivePathways/2021-01-06/AP_inherited_methylation.csv
website/data/ActivePathways/2021-01-06/AP_inherited_phosphorylation.csv
website/data/ActivePathways/2021-01-06/AP_inherited_ubiquitination.csv
website/data/all_RefGene_disorder.fa
website/data/all_RefGene_proteins.fa
website/data/cancer_types.txt
website/data/download.sh
website/data/mutations/annotate_clinvar.sh
website/data/mutations/annotate_mc3.sh
website/data/mutations/annotate_pcawg.sh
website/data/mutations/ensure_annovar.sh
website/data/mutations/tissue_source_site_codes.tsv
website/data/protein_data.tsv
website/data/regphos_kinome_scraped_clean.txt
website/database/__init__.py137
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2 hrs
website/database/bulk.py51
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0 mins
website/database/functions.py49
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website/database/lightning.py29
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website/database/manage.py42
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0 mins
website/database/migrate.py149
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3 hrs
website/database/types.py80
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45 mins
website/deploy.sh
website/example_config.py63
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0 mins
website/example_database.sql
website/exceptions.py5
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0 mins
website/exports/protein_data.py170
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4 hrs
website/flask_celery.py23
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0 mins
website/genomic_mappings.py121
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2 hrs
website/ggplot.py116
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2 hrs
website/hash_set_db.py203
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35 mins
website/helpers/__init__.py0
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0 mins
website/helpers/bioinf.py103
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0 mins
website/helpers/cache.py52
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1 hr
website/helpers/commands.py77
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1 hr
website/helpers/cytoscape.py92
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1 hr
website/helpers/filters/__init__.py8
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0 mins
website/helpers/filters/basic_filter.py316
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1 day
website/helpers/filters/manager.py322
C
1 day
website/helpers/filters/sqlalchemy_filter.py95
B
4 hrs
website/helpers/ggplot2.py8
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0 mins
website/helpers/models.py47
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50 mins
website/helpers/parsers.py156
B
4 hrs
website/helpers/patterns.py29
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55 mins
website/helpers/pickle.py6
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0 mins
website/helpers/plots.py146
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1 hr
website/helpers/tracks.py184
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5 hrs
website/helpers/utilities.py6
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0 mins
website/helpers/views.py160
B
5 hrs
website/helpers/widgets.py178
B
4 hrs