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reimandlab/Visualistion-Framework-for-Genome-Mutations

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website/manage.py

Summary

Maintainability
C
1 day
Test Coverage

File manage.py has 516 lines of code (exceeds 250 allowed). Consider refactoring.
Open

#!/usr/bin/env python3
import argparse
from contextlib import contextmanager
from typing import Mapping, Text
Severity: Major
Found in website/manage.py - About 1 day to fix

    Function run_manage has a Cognitive Complexity of 12 (exceeds 5 allowed). Consider refactoring.
    Open

    def run_manage(parsed_args, app=None):
    if not hasattr(parsed_args, 'func'):
        print('Scripts loaded successfully, no tasks specified.')
        return
    Severity: Minor
    Found in website/manage.py - About 1 hr to fix

    Cognitive Complexity

    Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

    A method's cognitive complexity is based on a few simple rules:

    • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
    • Code is considered more complex for each "break in the linear flow of the code"
    • Code is considered more complex when "flow breaking structures are nested"

    Further reading

    Function run_shell has a Cognitive Complexity of 8 (exceeds 5 allowed). Consider refactoring.
    Open

    def run_shell(args, readfunc=None):
    print('Starting interactive shell...')
    app = create_app(config_override=CONFIG)
    with app.app_context():
    Severity: Minor
    Found in website/manage.py - About 45 mins to fix

    Cognitive Complexity

    Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

    A method's cognitive complexity is based on a few simple rules:

    • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
    • Code is considered more complex for each "break in the linear flow of the code"
    • Code is considered more complex when "flow breaking structures are nested"

    Further reading

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