sanger/sequencescape

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Gemfile.lock

Summary

Maintainability
Test Coverage
GIT
  remote: https://github.com/payrollhero/acts-as-dag.git
  revision: 0a0a824013013d5b54d5b62716c3e29f0fe8a536
  specs:
    acts-as-dag (4.1.0)
      activemodel
      activerecord (>= 4.0.0)

GIT
  remote: https://github.com/sanger/jsonapi-resources.git
  revision: be2fb43f5f8da2e632fb5f48200928b2dd3d8bf9
  branch: develop
  specs:
    jsonapi-resources (0.9.0)
      activerecord (>= 4.1)
      concurrent-ruby
      railties (>= 4.1)

GIT
  remote: https://github.com/sanger/record_loader
  revision: 9e7481f4d2342f042ab13465962e5d6689863198
  specs:
    record_loader (0.3.0)

GIT
  remote: https://github.com/sanger/sanger_barcode_format.git
  revision: 8e93771a9f38e1efb07c1d82dca1a81d74353e11
  branch: development
  specs:
    sanger_barcode_format (0.2.0)

GEM
  remote: https://rubygems.org/
  specs:
    aasm (5.5.0)
      concurrent-ruby (~> 1.0)
    actioncable (6.1.7.8)
      actionpack (= 6.1.7.8)
      activesupport (= 6.1.7.8)
      nio4r (~> 2.0)
      websocket-driver (>= 0.6.1)
    actionmailbox (6.1.7.8)
      actionpack (= 6.1.7.8)
      activejob (= 6.1.7.8)
      activerecord (= 6.1.7.8)
      activestorage (= 6.1.7.8)
      activesupport (= 6.1.7.8)
      mail (>= 2.7.1)
    actionmailer (6.1.7.8)
      actionpack (= 6.1.7.8)
      actionview (= 6.1.7.8)
      activejob (= 6.1.7.8)
      activesupport (= 6.1.7.8)
      mail (~> 2.5, >= 2.5.4)
      rails-dom-testing (~> 2.0)
    actionpack (6.1.7.8)
      actionview (= 6.1.7.8)
      activesupport (= 6.1.7.8)
      rack (~> 2.0, >= 2.0.9)
      rack-test (>= 0.6.3)
      rails-dom-testing (~> 2.0)
      rails-html-sanitizer (~> 1.0, >= 1.2.0)
    actionpack-xml_parser (2.0.1)
      actionpack (>= 5.0)
      railties (>= 5.0)
    actiontext (6.1.7.8)
      actionpack (= 6.1.7.8)
      activerecord (= 6.1.7.8)
      activestorage (= 6.1.7.8)
      activesupport (= 6.1.7.8)
      nokogiri (>= 1.8.5)
    actionview (6.1.7.8)
      activesupport (= 6.1.7.8)
      builder (~> 3.1)
      erubi (~> 1.4)
      rails-dom-testing (~> 2.0)
      rails-html-sanitizer (~> 1.1, >= 1.2.0)
    activejob (6.1.7.8)
      activesupport (= 6.1.7.8)
      globalid (>= 0.3.6)
    activemodel (6.1.7.8)
      activesupport (= 6.1.7.8)
    activemodel-serializers-xml (1.0.2)
      activemodel (> 5.x)
      activesupport (> 5.x)
      builder (~> 3.1)
    activerecord (6.1.7.8)
      activemodel (= 6.1.7.8)
      activesupport (= 6.1.7.8)
    activerecord-import (1.7.0)
      activerecord (>= 4.2)
    activeresource (6.1.0)
      activemodel (>= 6.0)
      activemodel-serializers-xml (~> 1.0)
      activesupport (>= 6.0)
    activestorage (6.1.7.8)
      actionpack (= 6.1.7.8)
      activejob (= 6.1.7.8)
      activerecord (= 6.1.7.8)
      activesupport (= 6.1.7.8)
      marcel (~> 1.0)
      mini_mime (>= 1.1.0)
    activesupport (6.1.7.8)
      concurrent-ruby (~> 1.0, >= 1.0.2)
      i18n (>= 1.6, < 2)
      minitest (>= 5.1)
      tzinfo (~> 2.0)
      zeitwerk (~> 2.3)
    addressable (2.8.7)
      public_suffix (>= 2.0.2, < 7.0)
    after_commit_everywhere (1.4.0)
      activerecord (>= 4.2)
      activesupport
    amq-protocol (2.3.2)
    ast (2.4.2)
    avro (1.11.3)
      multi_json (~> 1.0)
    backports (3.25.0)
    base64 (0.2.0)
    bigdecimal (3.1.8)
    bootsnap (1.18.4)
      msgpack (~> 1.2)
    builder (3.3.0)
    bullet (7.2.0)
      activesupport (>= 3.0.0)
      uniform_notifier (~> 1.11)
    bunny (2.22.0)
      amq-protocol (~> 2.3, >= 2.3.1)
      sorted_set (~> 1, >= 1.0.2)
    byebug (11.1.3)
    cancancan (3.6.1)
    capybara (3.40.0)
      addressable
      matrix
      mini_mime (>= 0.1.3)
      nokogiri (~> 1.11)
      rack (>= 1.6.0)
      rack-test (>= 0.6.3)
      regexp_parser (>= 1.5, < 3.0)
      xpath (~> 3.2)
    carrierwave (3.0.7)
      activemodel (>= 6.0.0)
      activesupport (>= 6.0.0)
      addressable (~> 2.6)
      image_processing (~> 1.1)
      marcel (~> 1.0.0)
      ssrf_filter (~> 1.0)
    caxlsx (4.1.0)
      htmlentities (~> 4.3, >= 4.3.4)
      marcel (~> 1.0)
      nokogiri (~> 1.10, >= 1.10.4)
      rubyzip (>= 1.3.0, < 3)
    childprocess (5.0.0)
    choice (0.2.0)
    chronic (0.10.2)
    coderay (1.1.3)
    concurrent-ruby (1.3.4)
    configatron (4.5.1)
    connection_pool (2.4.1)
    crack (1.0.0)
      bigdecimal
      rexml
    crass (1.0.6)
    cucumber (9.1.2)
      builder (~> 3.2, >= 3.2.4)
      cucumber-ci-environment (~> 9.2, >= 9.2.0)
      cucumber-core (~> 12.0)
      cucumber-cucumber-expressions (~> 17.0)
      cucumber-gherkin (> 24, < 27)
      cucumber-html-formatter (> 20.3, < 22)
      cucumber-messages (> 19, < 25)
      diff-lcs (~> 1.5)
      mini_mime (~> 1.1, >= 1.1.5)
      multi_test (~> 1.1, >= 1.1.0)
      sys-uname (~> 1.2, >= 1.2.3)
    cucumber-ci-environment (9.2.0)
    cucumber-core (12.0.0)
      cucumber-gherkin (>= 25, < 27)
      cucumber-messages (>= 20, < 23)
      cucumber-tag-expressions (~> 5.0, >= 5.0.4)
    cucumber-cucumber-expressions (17.0.2)
      bigdecimal
    cucumber-gherkin (26.2.0)
      cucumber-messages (>= 19.1.4, < 22.1)
    cucumber-html-formatter (21.2.0)
      cucumber-messages (> 19, < 25)
    cucumber-messages (22.0.0)
    cucumber-rails (3.0.0)
      capybara (>= 3.11, < 4)
      cucumber (>= 5, < 10)
      railties (>= 5.2, < 8)
    cucumber-tag-expressions (5.0.6)
    cucumber_github_formatter (0.1.0)
    daemons (1.4.1)
    database_cleaner (2.0.2)
      database_cleaner-active_record (>= 2, < 3)
    database_cleaner-active_record (2.1.0)
      activerecord (>= 5.a)
      database_cleaner-core (~> 2.0.0)
    database_cleaner-core (2.0.1)
    date (3.3.4)
    delayed_job (4.1.11)
      activesupport (>= 3.0, < 8.0)
    delayed_job_active_record (4.1.8)
      activerecord (>= 3.0, < 8.0)
      delayed_job (>= 3.0, < 5)
    diff-lcs (1.5.1)
    docile (1.4.0)
    domain_name (0.6.20240107)
    dry-cli (1.0.0)
    erubi (1.13.0)
    exception_notification (4.5.0)
      actionmailer (>= 5.2, < 8)
      activesupport (>= 5.2, < 8)
    factory_bot (6.4.6)
      activesupport (>= 5.0.0)
    factory_bot_rails (6.4.3)
      factory_bot (~> 6.4)
      railties (>= 5.0.0)
    ffi (1.16.3)
    flipper (0.25.4)
    flipper-active_record (0.25.4)
      activerecord (>= 4.2, < 8)
      flipper (~> 0.25.4)
    flipper-ui (0.25.4)
      erubi (>= 1.0.0, < 2.0.0)
      flipper (~> 0.25.4)
      rack (>= 1.4, < 3)
      rack-protection (>= 1.5.3, <= 4.0.0)
      sanitize (< 7)
    formtastic (5.0.0)
      actionpack (>= 6.0.0)
    globalid (1.2.1)
      activesupport (>= 6.1)
    haml (6.3.0)
      temple (>= 0.8.2)
      thor
      tilt
    hashdiff (1.1.0)
    htmlentities (4.3.4)
    http-accept (1.7.0)
    http-cookie (1.0.5)
      domain_name (~> 0.5)
    i18n (1.14.5)
      concurrent-ruby (~> 1.0)
    image_processing (1.12.2)
      mini_magick (>= 4.9.5, < 5)
      ruby-vips (>= 2.0.17, < 3)
    json (2.7.2)
    jsonapi-resources-matchers (1.0.0)
      jsonapi-resources (>= 0.9.0)
    knapsack_pro (7.6.2)
      rake
    language_server-protocol (3.17.0.3)
    launchy (3.0.1)
      addressable (~> 2.8)
      childprocess (~> 5.0)
    listen (3.9.0)
      rb-fsevent (~> 0.10, >= 0.10.3)
      rb-inotify (~> 0.9, >= 0.9.10)
    logger (1.6.0)
    loofah (2.22.0)
      crass (~> 1.0.2)
      nokogiri (>= 1.12.0)
    mail (2.8.1)
      mini_mime (>= 0.1.1)
      net-imap
      net-pop
      net-smtp
    marcel (1.0.4)
    matrix (0.4.2)
    method_source (1.1.0)
    mime-types (3.5.2)
      mime-types-data (~> 3.2015)
    mime-types-data (3.2024.0305)
    mini_magick (4.12.0)
    mini_mime (1.1.5)
    minitest (5.25.1)
    minitest-profiler (0.0.2)
      activesupport (>= 4.1.0)
      minitest (>= 5.3.3)
    mocha (2.4.5)
      ruby2_keywords (>= 0.0.5)
    msgpack (1.7.2)
    multi_json (1.15.0)
    multi_test (1.1.0)
    mustermann (3.0.0)
      ruby2_keywords (~> 0.0.1)
    mysql2 (0.5.6)
    net-imap (0.4.14)
      date
      net-protocol
    net-ldap (0.19.0)
    net-pop (0.1.2)
      net-protocol
    net-protocol (0.2.2)
      timeout
    net-smtp (0.5.0)
      net-protocol
    netrc (0.11.0)
    nio4r (2.7.3)
    nokogiri (1.16.7-arm64-darwin)
      racc (~> 1.4)
    nokogiri (1.16.7-x86_64-darwin)
      racc (~> 1.4)
    nokogiri (1.16.7-x86_64-linux)
      racc (~> 1.4)
    parallel (1.24.0)
    parser (3.3.0.5)
      ast (~> 2.4.1)
      racc
    prettier_print (1.2.1)
    pry (0.14.2)
      coderay (~> 1.1)
      method_source (~> 1.0)
    pry-byebug (3.10.1)
      byebug (~> 11.0)
      pry (>= 0.13, < 0.15)
    pry-rails (0.3.11)
      pry (>= 0.13.0)
    psych (3.3.4)
    public_suffix (6.0.0)
    puma (6.4.2)
      nio4r (~> 2.0)
    racc (1.8.1)
    rack (2.2.9)
    rack-acceptable (0.1.0)
      rack (>= 1.1.0)
    rack-cors (2.0.2)
      rack (>= 2.0.0)
    rack-mini-profiler (3.3.1)
      rack (>= 1.2.0)
    rack-protection (3.2.0)
      base64 (>= 0.1.0)
      rack (~> 2.2, >= 2.2.4)
    rack-proxy (0.7.7)
      rack
    rack-test (2.1.0)
      rack (>= 1.3)
    rails (6.1.7.8)
      actioncable (= 6.1.7.8)
      actionmailbox (= 6.1.7.8)
      actionmailer (= 6.1.7.8)
      actionpack (= 6.1.7.8)
      actiontext (= 6.1.7.8)
      actionview (= 6.1.7.8)
      activejob (= 6.1.7.8)
      activemodel (= 6.1.7.8)
      activerecord (= 6.1.7.8)
      activestorage (= 6.1.7.8)
      activesupport (= 6.1.7.8)
      bundler (>= 1.15.0)
      railties (= 6.1.7.8)
      sprockets-rails (>= 2.0.0)
    rails-controller-testing (1.0.5)
      actionpack (>= 5.0.1.rc1)
      actionview (>= 5.0.1.rc1)
      activesupport (>= 5.0.1.rc1)
    rails-dom-testing (2.2.0)
      activesupport (>= 5.0.0)
      minitest
      nokogiri (>= 1.6)
    rails-erd (1.7.2)
      activerecord (>= 4.2)
      activesupport (>= 4.2)
      choice (~> 0.2.0)
      ruby-graphviz (~> 1.2)
    rails-html-sanitizer (1.6.0)
      loofah (~> 2.21)
      nokogiri (~> 1.14)
    rails-perftest (0.0.7)
    railties (6.1.7.8)
      actionpack (= 6.1.7.8)
      activesupport (= 6.1.7.8)
      method_source
      rake (>= 12.2)
      thor (~> 1.0)
    rainbow (3.1.1)
    rake (13.2.1)
    rb-fsevent (0.11.2)
    rb-inotify (0.10.1)
      ffi (~> 1.0)
    rbs (3.5.1)
      logger
    rbtree (0.4.6)
    regexp_parser (2.9.0)
    rest-client (2.1.0)
      http-accept (>= 1.7.0, < 2.0)
      http-cookie (>= 1.0.2, < 2.0)
      mime-types (>= 1.16, < 4.0)
      netrc (~> 0.8)
    rexml (3.3.6)
      strscan
    roo (2.10.1)
      nokogiri (~> 1)
      rubyzip (>= 1.3.0, < 3.0.0)
    rspec (3.13.0)
      rspec-core (~> 3.13.0)
      rspec-expectations (~> 3.13.0)
      rspec-mocks (~> 3.13.0)
    rspec-collection_matchers (1.2.1)
      rspec-expectations (>= 2.99.0.beta1)
    rspec-core (3.13.0)
      rspec-support (~> 3.13.0)
    rspec-expectations (3.13.2)
      diff-lcs (>= 1.2.0, < 2.0)
      rspec-support (~> 3.13.0)
    rspec-github (2.4.0)
      rspec-core (~> 3.0)
    rspec-html-matchers (0.10.0)
      nokogiri (~> 1)
      rspec (>= 3.0.0.a)
    rspec-json_expectations (2.2.0)
    rspec-longrun (3.1.0)
      rspec-core (>= 3.5.0, < 4)
    rspec-mocks (3.13.1)
      diff-lcs (>= 1.2.0, < 2.0)
      rspec-support (~> 3.13.0)
    rspec-rails (6.1.4)
      actionpack (>= 6.1)
      activesupport (>= 6.1)
      railties (>= 6.1)
      rspec-core (~> 3.13)
      rspec-expectations (~> 3.13)
      rspec-mocks (~> 3.13)
      rspec-support (~> 3.13)
    rspec-support (3.13.1)
    rubocop (1.61.0)
      json (~> 2.3)
      language_server-protocol (>= 3.17.0)
      parallel (~> 1.10)
      parser (>= 3.3.0.2)
      rainbow (>= 2.2.2, < 4.0)
      regexp_parser (>= 1.8, < 3.0)
      rexml (>= 3.2.5, < 4.0)
      rubocop-ast (>= 1.30.0, < 2.0)
      ruby-progressbar (~> 1.7)
      unicode-display_width (>= 2.4.0, < 3.0)
    rubocop-ast (1.31.1)
      parser (>= 3.3.0.4)
    rubocop-capybara (2.20.0)
      rubocop (~> 1.41)
    rubocop-factory_bot (2.25.1)
      rubocop (~> 1.41)
    rubocop-performance (1.20.2)
      rubocop (>= 1.48.1, < 2.0)
      rubocop-ast (>= 1.30.0, < 2.0)
    rubocop-rails (2.24.0)
      activesupport (>= 4.2.0)
      rack (>= 1.1)
      rubocop (>= 1.33.0, < 2.0)
      rubocop-ast (>= 1.31.1, < 2.0)
    rubocop-rspec (2.27.1)
      rubocop (~> 1.40)
      rubocop-capybara (~> 2.17)
      rubocop-factory_bot (~> 2.22)
    ruby-graphviz (1.2.5)
      rexml
    ruby-prof (1.7.0)
    ruby-progressbar (1.13.0)
    ruby-units (4.0.3)
    ruby-vips (2.2.1)
      ffi (~> 1.12)
    ruby2_keywords (0.0.5)
    rubyzip (2.3.2)
    sanger_warren (0.4.1)
      bunny (~> 2.17)
      connection_pool (~> 2.2)
      multi_json (~> 1.0)
      thor (~> 1.1)
    sanitize (6.1.0)
      crass (~> 1.0.2)
      nokogiri (>= 1.12.0)
    selenium-webdriver (4.22.0)
      base64 (~> 0.2)
      logger (~> 1.4)
      rexml (~> 3.2, >= 3.2.5)
      rubyzip (>= 1.2.2, < 3.0)
      websocket (~> 1.0)
    set (1.1.0)
    shoulda (4.0.0)
      shoulda-context (~> 2.0)
      shoulda-matchers (~> 4.0)
    shoulda-context (2.0.0)
    shoulda-matchers (4.5.1)
      activesupport (>= 4.2.0)
    simplecov (0.22.0)
      docile (~> 1.1)
      simplecov-html (~> 0.11)
      simplecov_json_formatter (~> 0.1)
    simplecov-html (0.12.3)
    simplecov_json_formatter (0.1.4)
    sinatra (3.2.0)
      mustermann (~> 3.0)
      rack (~> 2.2, >= 2.2.4)
      rack-protection (= 3.2.0)
      tilt (~> 2.0)
    slack-notifier (2.4.0)
    sorted_set (1.0.3)
      rbtree
      set (~> 1.0)
    sprockets (4.2.1)
      concurrent-ruby (~> 1.0)
      rack (>= 2.2.4, < 4)
    sprockets-rails (3.5.1)
      actionpack (>= 6.1)
      activesupport (>= 6.1)
      sprockets (>= 3.0.0)
    ssrf_filter (1.1.2)
    strscan (3.1.0)
    syntax_tree (6.2.0)
      prettier_print (>= 1.2.0)
    syntax_tree-haml (4.0.3)
      haml (>= 5.2)
      prettier_print (>= 1.2.1)
      syntax_tree (>= 6.0.0)
    syntax_tree-rbs (1.0.0)
      prettier_print
      rbs
      syntax_tree (>= 2.0.1)
    sys-uname (1.2.3)
      ffi (~> 1.1)
    temple (0.10.3)
    test-prof (1.3.3.1)
    thor (1.3.1)
    tilt (2.3.0)
    timecop (0.9.10)
    timeout (0.4.1)
    traceroute (0.8.1)
      rails (>= 3.0.0)
    tzinfo (2.0.6)
      concurrent-ruby (~> 1.0)
    unicode-display_width (2.5.0)
    uniform_notifier (1.16.0)
    uuidtools (2.2.0)
    vite_rails (3.0.17)
      railties (>= 5.1, < 8)
      vite_ruby (~> 3.0, >= 3.2.2)
    vite_ruby (3.5.0)
      dry-cli (>= 0.7, < 2)
      rack-proxy (~> 0.6, >= 0.6.1)
      zeitwerk (~> 2.2)
    webmock (3.23.1)
      addressable (>= 2.8.0)
      crack (>= 0.3.2)
      hashdiff (>= 0.4.0, < 2.0.0)
    websocket (1.2.10)
    websocket-driver (0.7.6)
      websocket-extensions (>= 0.1.0)
    websocket-extensions (0.1.5)
    whenever (1.0.0)
      chronic (>= 0.6.3)
    will_paginate (4.0.1)
    will_paginate-bootstrap (1.0.2)
      will_paginate (>= 3.0.3)
    xpath (3.2.0)
      nokogiri (~> 1.8)
    yard (0.9.36)
    yard-activerecord (0.0.16)
      yard (>= 0.8.3)
    yard-junk (0.0.9)
      backports (>= 3.18)
      rainbow
      yard
    zeitwerk (2.6.17)

PLATFORMS
  arm64-darwin
  arm64-darwin-23
  x86_64-darwin-21
  x86_64-linux

DEPENDENCIES
  aasm
  actionpack-xml_parser
  activerecord-import
  activeresource
  acts-as-dag!
  after_commit_everywhere (~> 1.0)
  avro (~> 1.11.0)
  bootsnap
  builder
  bullet
  bunny (>= 2.22.0)
  cancancan
  capybara
  carrierwave
  caxlsx
  configatron
  cucumber-rails
  cucumber_github_formatter
  daemons
  database_cleaner
  delayed_job_active_record
  exception_notification
  factory_bot_rails
  flipper (~> 0.25.0)
  flipper-active_record (~> 0.25.0)
  flipper-ui (~> 0.25.0)
  formtastic
  json
  jsonapi-resources!
  jsonapi-resources-matchers
  knapsack_pro
  launchy
  listen
  minitest
  minitest-profiler
  mocha
  multi_json
  mysql2
  net-ldap
  nokogiri
  prettier_print
  pry-byebug
  pry-rails
  psych (< 4)
  puma
  rack-acceptable
  rack-cors
  rack-mini-profiler
  rails (~> 6.1.7)
  rails-controller-testing
  rails-erd
  rails-perftest
  rainbow
  record_loader!
  rest-client
  roo
  rspec-collection_matchers
  rspec-github
  rspec-html-matchers
  rspec-json_expectations
  rspec-longrun
  rspec-rails
  rubocop
  rubocop-performance
  rubocop-rails
  rubocop-rspec
  ruby-prof
  ruby-units
  sanger_barcode_format!
  sanger_warren
  selenium-webdriver (~> 4.1)
  shoulda
  simplecov
  sinatra
  slack-notifier
  syntax_tree
  syntax_tree-haml
  syntax_tree-rbs
  test-prof
  timecop
  traceroute
  uuidtools
  vite_rails
  webmock
  whenever
  will_paginate
  will_paginate-bootstrap
  yard
  yard-activerecord (~> 0.0.16)
  yard-junk (~> 0.0.9)

BUNDLED WITH
   2.5.9