sanger/sequencescape

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app/controllers/qc_reports_controller.rb

Summary

Maintainability
A
1 hr
Test Coverage
C
73%

Complex method QcReportsController#index (35.3)
Open

  def index # rubocop:todo Metrics/AbcSize
    # Build a conditions hash of acceptable parameters, ignoring those that are blank

    @qc_reports = QcReport.for_report_page(conditions).page(params[:page]).includes(:study, :product)
    @qc_report = QcReport.new(exclude_existing: true, study_id: params[:study_id])

Flog calculates the ABC score for methods. The ABC score is based on assignments, branches (method calls), and conditions.

You can read more about ABC metrics or the flog tool

Complex method QcReportsController#create (33.5)
Open

  def create # rubocop:todo Metrics/AbcSize, Metrics/MethodLength
    study = Study.find_by(id: params[:qc_report][:study_id])
    exclude_existing = params[:qc_report][:exclude_existing] == '1'
    qc_report =
      QcReport.new(

Flog calculates the ABC score for methods. The ABC score is based on assignments, branches (method calls), and conditions.

You can read more about ABC metrics or the flog tool

Complex method QcReportsController#check_required (29.7)
Open

  def check_required # rubocop:todo Metrics/AbcSize
    return fail('No report options were provided') if params[:qc_report].blank?
    return fail('You must select a product') if params[:qc_report][:product_id].nil?

    @product = Product.find_by(id: params[:qc_report][:product_id])

Flog calculates the ABC score for methods. The ABC score is based on assignments, branches (method calls), and conditions.

You can read more about ABC metrics or the flog tool

Complex method QcReportsController#show (27.4)
Open

  def show # rubocop:todo Metrics/AbcSize
    qc_report = QcReport.find_by!(report_identifier: params[:id])
    queue_count = qc_report.queued? ? Delayed::Job.count : 0
    @report_presenter = Presenters::QcReportPresenter.new(qc_report, queue_count)

Flog calculates the ABC score for methods. The ABC score is based on assignments, branches (method calls), and conditions.

You can read more about ABC metrics or the flog tool

Method show has a Cognitive Complexity of 9 (exceeds 5 allowed). Consider refactoring.
Open

  def show # rubocop:todo Metrics/AbcSize
    qc_report = QcReport.find_by!(report_identifier: params[:id])
    queue_count = qc_report.queued? ? Delayed::Job.count : 0
    @report_presenter = Presenters::QcReportPresenter.new(qc_report, queue_count)

Severity: Minor
Found in app/controllers/qc_reports_controller.rb - About 55 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

QcReportsController has at least 9 instance variables
Open

class QcReportsController < ApplicationController

Too Many Instance Variables is a special case of LargeClass.

Example

Given this configuration

TooManyInstanceVariables:
  max_instance_variables: 3

and this code:

class TooManyInstanceVariables
  def initialize
    @arg_1 = :dummy
    @arg_2 = :dummy
    @arg_3 = :dummy
    @arg_4 = :dummy
  end
end

Reek would emit the following warning:

test.rb -- 5 warnings:
  [1]:TooManyInstanceVariables has at least 4 instance variables (TooManyInstanceVariables)

QcReportsController#index has approx 10 statements
Open

  def index # rubocop:todo Metrics/AbcSize

A method with Too Many Statements is any method that has a large number of lines.

Too Many Statements warns about any method that has more than 5 statements. Reek's smell detector for Too Many Statements counts +1 for every simple statement in a method and +1 for every statement within a control structure (if, else, case, when, for, while, until, begin, rescue) but it doesn't count the control structure itself.

So the following method would score +6 in Reek's statement-counting algorithm:

def parse(arg, argv, &error)
  if !(val = arg) and (argv.empty? or /\A-/ =~ (val = argv[0]))
    return nil, block, nil                                         # +1
  end
  opt = (val = parse_arg(val, &error))[1]                          # +2
  val = conv_arg(*val)                                             # +3
  if opt and !arg
    argv.shift                                                     # +4
  else
    val[0] = nil                                                   # +5
  end
  val                                                              # +6
end

(You might argue that the two assigments within the first @if@ should count as statements, and that perhaps the nested assignment should count as +2.)

QcReportsController#create has approx 8 statements
Open

  def create # rubocop:todo Metrics/AbcSize, Metrics/MethodLength

A method with Too Many Statements is any method that has a large number of lines.

Too Many Statements warns about any method that has more than 5 statements. Reek's smell detector for Too Many Statements counts +1 for every simple statement in a method and +1 for every statement within a control structure (if, else, case, when, for, while, until, begin, rescue) but it doesn't count the control structure itself.

So the following method would score +6 in Reek's statement-counting algorithm:

def parse(arg, argv, &error)
  if !(val = arg) and (argv.empty? or /\A-/ =~ (val = argv[0]))
    return nil, block, nil                                         # +1
  end
  opt = (val = parse_arg(val, &error))[1]                          # +2
  val = conv_arg(*val)                                             # +3
  if opt and !arg
    argv.shift                                                     # +4
  else
    val[0] = nil                                                   # +5
  end
  val                                                              # +6
end

(You might argue that the two assigments within the first @if@ should count as statements, and that perhaps the nested assignment should count as +2.)

QcReportsController#check_required has approx 7 statements
Open

  def check_required # rubocop:todo Metrics/AbcSize

A method with Too Many Statements is any method that has a large number of lines.

Too Many Statements warns about any method that has more than 5 statements. Reek's smell detector for Too Many Statements counts +1 for every simple statement in a method and +1 for every statement within a control structure (if, else, case, when, for, while, until, begin, rescue) but it doesn't count the control structure itself.

So the following method would score +6 in Reek's statement-counting algorithm:

def parse(arg, argv, &error)
  if !(val = arg) and (argv.empty? or /\A-/ =~ (val = argv[0]))
    return nil, block, nil                                         # +1
  end
  opt = (val = parse_arg(val, &error))[1]                          # +2
  val = conv_arg(*val)                                             # +3
  if opt and !arg
    argv.shift                                                     # +4
  else
    val[0] = nil                                                   # +5
  end
  val                                                              # +6
end

(You might argue that the two assigments within the first @if@ should count as statements, and that perhaps the nested assignment should count as +2.)

QcReportsController#qc_file has approx 6 statements
Open

  def qc_file

A method with Too Many Statements is any method that has a large number of lines.

Too Many Statements warns about any method that has more than 5 statements. Reek's smell detector for Too Many Statements counts +1 for every simple statement in a method and +1 for every statement within a control structure (if, else, case, when, for, while, until, begin, rescue) but it doesn't count the control structure itself.

So the following method would score +6 in Reek's statement-counting algorithm:

def parse(arg, argv, &error)
  if !(val = arg) and (argv.empty? or /\A-/ =~ (val = argv[0]))
    return nil, block, nil                                         # +1
  end
  opt = (val = parse_arg(val, &error))[1]                          # +2
  val = conv_arg(*val)                                             # +3
  if opt and !arg
    argv.shift                                                     # +4
  else
    val[0] = nil                                                   # +5
  end
  val                                                              # +6
end

(You might argue that the two assigments within the first @if@ should count as statements, and that perhaps the nested assignment should count as +2.)

QcReportsController#show has approx 12 statements
Open

  def show # rubocop:todo Metrics/AbcSize

A method with Too Many Statements is any method that has a large number of lines.

Too Many Statements warns about any method that has more than 5 statements. Reek's smell detector for Too Many Statements counts +1 for every simple statement in a method and +1 for every statement within a control structure (if, else, case, when, for, while, until, begin, rescue) but it doesn't count the control structure itself.

So the following method would score +6 in Reek's statement-counting algorithm:

def parse(arg, argv, &error)
  if !(val = arg) and (argv.empty? or /\A-/ =~ (val = argv[0]))
    return nil, block, nil                                         # +1
  end
  opt = (val = parse_arg(val, &error))[1]                          # +2
  val = conv_arg(*val)                                             # +3
  if opt and !arg
    argv.shift                                                     # +4
  else
    val[0] = nil                                                   # +5
  end
  val                                                              # +6
end

(You might argue that the two assigments within the first @if@ should count as statements, and that perhaps the nested assignment should count as +2.)

QcReportsController#conditions calls 'params[:product_id]' 2 times
Open

    conds[:product_criteria] = { product_id: params[:product_id] } if params[:product_id].present?

Duplication occurs when two fragments of code look nearly identical, or when two fragments of code have nearly identical effects at some conceptual level.

Reek implements a check for Duplicate Method Call.

Example

Here's a very much simplified and contrived example. The following method will report a warning:

def double_thing()
  @other.thing + @other.thing
end

One quick approach to silence Reek would be to refactor the code thus:

def double_thing()
  thing = @other.thing
  thing + thing
end

A slightly different approach would be to replace all calls of double_thing by calls to @other.double_thing:

class Other
  def double_thing()
    thing + thing
  end
end

The approach you take will depend on balancing other factors in your code.

QcReportsController#index calls 'product.id' 2 times
Open

    @all_products = Product.alphabetical.all.map { |product| [product.display_name, product.id] }
    @active_products =
      Product.with_stock_report.active.alphabetical.all.map { |product| [product.display_name, product.id] }

Duplication occurs when two fragments of code look nearly identical, or when two fragments of code have nearly identical effects at some conceptual level.

Reek implements a check for Duplicate Method Call.

Example

Here's a very much simplified and contrived example. The following method will report a warning:

def double_thing()
  @other.thing + @other.thing
end

One quick approach to silence Reek would be to refactor the code thus:

def double_thing()
  thing = @other.thing
  thing + thing
end

A slightly different approach would be to replace all calls of double_thing by calls to @other.double_thing:

class Other
  def double_thing()
    thing + thing
  end
end

The approach you take will depend on balancing other factors in your code.

QcReportsController#show calls '@report_presenter.filename' 2 times
Open

          file = Tempfile.new(@report_presenter.filename)
          @report_presenter.to_csv(file)
          file.flush
        ensure
          file.close unless file.nil?

Duplication occurs when two fragments of code look nearly identical, or when two fragments of code have nearly identical effects at some conceptual level.

Reek implements a check for Duplicate Method Call.

Example

Here's a very much simplified and contrived example. The following method will report a warning:

def double_thing()
  @other.thing + @other.thing
end

One quick approach to silence Reek would be to refactor the code thus:

def double_thing()
  thing = @other.thing
  thing + thing
end

A slightly different approach would be to replace all calls of double_thing by calls to @other.double_thing:

class Other
  def double_thing()
    thing + thing
  end
end

The approach you take will depend on balancing other factors in your code.

QcReportsController#check_required calls 'product.name' 2 times
Open

    return fail("#{product.name} is inactive") if @product.deprecated?
    return fail("#{product.name} does not have any stock criteria set") if @product.stock_criteria.nil?

Duplication occurs when two fragments of code look nearly identical, or when two fragments of code have nearly identical effects at some conceptual level.

Reek implements a check for Duplicate Method Call.

Example

Here's a very much simplified and contrived example. The following method will report a warning:

def double_thing()
  @other.thing + @other.thing
end

One quick approach to silence Reek would be to refactor the code thus:

def double_thing()
  thing = @other.thing
  thing + thing
end

A slightly different approach would be to replace all calls of double_thing by calls to @other.double_thing:

class Other
  def double_thing()
    thing + thing
  end
end

The approach you take will depend on balancing other factors in your code.

QcReportsController#create calls 'params[:qc_report]' 3 times
Open

    study = Study.find_by(id: params[:qc_report][:study_id])
    exclude_existing = params[:qc_report][:exclude_existing] == '1'
    qc_report =
      QcReport.new(
        study: study,

Duplication occurs when two fragments of code look nearly identical, or when two fragments of code have nearly identical effects at some conceptual level.

Reek implements a check for Duplicate Method Call.

Example

Here's a very much simplified and contrived example. The following method will report a warning:

def double_thing()
  @other.thing + @other.thing
end

One quick approach to silence Reek would be to refactor the code thus:

def double_thing()
  thing = @other.thing
  thing + thing
end

A slightly different approach would be to replace all calls of double_thing by calls to @other.double_thing:

class Other
  def double_thing()
    thing + thing
  end
end

The approach you take will depend on balancing other factors in your code.

QcReportsController#conditions calls 'params[:study_id]' 2 times
Open

    conds[:study_id] = params[:study_id] if params[:study_id].present?

Duplication occurs when two fragments of code look nearly identical, or when two fragments of code have nearly identical effects at some conceptual level.

Reek implements a check for Duplicate Method Call.

Example

Here's a very much simplified and contrived example. The following method will report a warning:

def double_thing()
  @other.thing + @other.thing
end

One quick approach to silence Reek would be to refactor the code thus:

def double_thing()
  thing = @other.thing
  thing + thing
end

A slightly different approach would be to replace all calls of double_thing by calls to @other.double_thing:

class Other
  def double_thing()
    thing + thing
  end
end

The approach you take will depend on balancing other factors in your code.

QcReportsController#conditions calls 'params[:state]' 2 times
Open

    conds[:state] = params[:state] if params[:state].present?

Duplication occurs when two fragments of code look nearly identical, or when two fragments of code have nearly identical effects at some conceptual level.

Reek implements a check for Duplicate Method Call.

Example

Here's a very much simplified and contrived example. The following method will report a warning:

def double_thing()
  @other.thing + @other.thing
end

One quick approach to silence Reek would be to refactor the code thus:

def double_thing()
  thing = @other.thing
  thing + thing
end

A slightly different approach would be to replace all calls of double_thing by calls to @other.double_thing:

class Other
  def double_thing()
    thing + thing
  end
end

The approach you take will depend on balancing other factors in your code.

QcReportsController#index calls 'product.display_name' 2 times
Open

    @all_products = Product.alphabetical.all.map { |product| [product.display_name, product.id] }
    @active_products =
      Product.with_stock_report.active.alphabetical.all.map { |product| [product.display_name, product.id] }

Duplication occurs when two fragments of code look nearly identical, or when two fragments of code have nearly identical effects at some conceptual level.

Reek implements a check for Duplicate Method Call.

Example

Here's a very much simplified and contrived example. The following method will report a warning:

def double_thing()
  @other.thing + @other.thing
end

One quick approach to silence Reek would be to refactor the code thus:

def double_thing()
  thing = @other.thing
  thing + thing
end

A slightly different approach would be to replace all calls of double_thing by calls to @other.double_thing:

class Other
  def double_thing()
    thing + thing
  end
end

The approach you take will depend on balancing other factors in your code.

QcReportsController#check_required calls 'params[:qc_report]' 3 times
Open

    return fail('No report options were provided') if params[:qc_report].blank?
    return fail('You must select a product') if params[:qc_report][:product_id].nil?

    @product = Product.find_by(id: params[:qc_report][:product_id])

Duplication occurs when two fragments of code look nearly identical, or when two fragments of code have nearly identical effects at some conceptual level.

Reek implements a check for Duplicate Method Call.

Example

Here's a very much simplified and contrived example. The following method will report a warning:

def double_thing()
  @other.thing + @other.thing
end

One quick approach to silence Reek would be to refactor the code thus:

def double_thing()
  thing = @other.thing
  thing + thing
end

A slightly different approach would be to replace all calls of double_thing by calls to @other.double_thing:

class Other
  def double_thing()
    thing + thing
  end
end

The approach you take will depend on balancing other factors in your code.

QcReportsController#check_required calls 'params[:qc_report][:product_id]' 2 times
Open

    return fail('You must select a product') if params[:qc_report][:product_id].nil?

    @product = Product.find_by(id: params[:qc_report][:product_id])

Duplication occurs when two fragments of code look nearly identical, or when two fragments of code have nearly identical effects at some conceptual level.

Reek implements a check for Duplicate Method Call.

Example

Here's a very much simplified and contrived example. The following method will report a warning:

def double_thing()
  @other.thing + @other.thing
end

One quick approach to silence Reek would be to refactor the code thus:

def double_thing()
  thing = @other.thing
  thing + thing
end

A slightly different approach would be to replace all calls of double_thing by calls to @other.double_thing:

class Other
  def double_thing()
    thing + thing
  end
end

The approach you take will depend on balancing other factors in your code.

Avoid too many return statements within this method.
Open

    return fail("#{product.name} does not have any stock criteria set") if @product.stock_criteria.nil?
Severity: Major
Found in app/controllers/qc_reports_controller.rb - About 30 mins to fix

    QcReportsController#check_required performs a nil-check
    Open

        return fail('You must select a product') if params[:qc_report][:product_id].nil?
    
        @product = Product.find_by(id: params[:qc_report][:product_id])
        return fail('Could not find product') if @product.nil?
        return fail("#{product.name} is inactive") if @product.deprecated?

    A NilCheck is a type check. Failures of NilCheck violate the "tell, don't ask" principle.

    Additionally, type checks often mask bigger problems in your source code like not using OOP and / or polymorphism when you should.

    Example

    Given

    class Klass
      def nil_checker(argument)
        if argument.nil?
          puts "argument isn't nil!"
        end
      end
    end

    Reek would emit the following warning:

    test.rb -- 1 warning:
      [3]:Klass#nil_checker performs a nil-check. (NilCheck)

    QcReportsController#show performs a nil-check
    Open

              file.close unless file.nil?

    A NilCheck is a type check. Failures of NilCheck violate the "tell, don't ask" principle.

    Additionally, type checks often mask bigger problems in your source code like not using OOP and / or polymorphism when you should.

    Example

    Given

    class Klass
      def nil_checker(argument)
        if argument.nil?
          puts "argument isn't nil!"
        end
      end
    end

    Reek would emit the following warning:

    test.rb -- 1 warning:
      [3]:Klass#nil_checker performs a nil-check. (NilCheck)

    QcReportsController#index has the variable name 's'
    Open

        @states = QcReport.available_states.map { |s| [s.humanize, s] }

    An Uncommunicative Variable Name is a variable name that doesn't communicate its intent well enough.

    Poor names make it hard for the reader to build a mental picture of what's going on in the code. They can also be mis-interpreted; and they hurt the flow of reading, because the reader must slow down to interpret the names.

    There are no issues that match your filters.

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